PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020652
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 740aa    MW: 81865.8 Da    PI: 7.0167
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020652genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix384.4e-1274148171
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkr 71 
                  +W++  + +Liea  e++ +l+rg+lk ++W+ev++ + +++g     ++ +qCk++++ ++k+yk +++    +
  Lus10020652  74 CWSEGATAVLIEAWGERHVELSRGNLKHNHWKEVADIVaSREGWakpPKTDIQCKNRIDTVKKKYKSERAKIDAG 148
                  7************************************975666622245778***************99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-1972154No hitNo description
PROSITE profilePS513755.47191221IPR002885Pentatricopeptide repeat
PfamPF130411.8E-7221269IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.03222256IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.739292322IPR002885Pentatricopeptide repeat
PfamPF015350.043297322IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.3E-6320354IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.819323357IPR002885Pentatricopeptide repeat
PfamPF015354.1E-6325354IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-6325356IPR002885Pentatricopeptide repeat
PfamPF015355.1E-4356385IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0026356385IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.3E-6422475IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.224424454IPR002885Pentatricopeptide repeat
PfamPF015350.0064428452IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.1458488IPR002885Pentatricopeptide repeat
PfamPF015354.3E-4460487IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.1E-5460494IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.919494528IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.875529559IPR002885Pentatricopeptide repeat
PfamPF130413.6E-12561608IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.452561595IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.8E-8563596IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.3E-6564597IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.708596631IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.448632666IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.3E-6633720IPR011990Tetratricopeptide-like helical domain
PfamPF015350.38636656IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.733698732IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MDDVGEIQSP VSSSPSDGRI SVAVDDAAAD AAAVLTLPPP SSPKEPAPDA SNALARTNNT  60
GGGGGGGGGG REDCWSEGAT AVLIEAWGER HVELSRGNLK HNHWKEVADI VASREGWAKP  120
PKTDIQCKNR IDTVKKKYKS ERAKIDAGNG PSKMPLQQRR WYQHHPVAFG QVKPEAFHAR  180
AVKGGPLCCN LDASCNYLLK LYSMYADLND ARKLFYEILN KDVRTWTILI SSFARNGADS  240
AVLNLCRNMQ VDGVKPNQFT LSAVLKSCSS LYELKSGKAV HGWIWRNEIA FDVVLENSVL  300
DLYVKCRALS SAEKLFGKME DKDTVSWNIM MGAYLHLGDT RKSLEFFDSM KSKDVVSWNT  360
MIDGLISCDC GTAALEVLYR MVADGPNFNA VTFSTALNLV SCLSVLQPGK EIHGMVIRLR  420
LHNQGFIMSS LVDMYCKCGE MRLAATIFDK MCLKSPARRF SWSSMVSGYV RNGEYTHAFE  480
TVKYMFKEDD VEVDIYTLTS VVSGCAATSN SEVGRQIDAH VQKVGHKVDP HLVSSFIDMY  540
TKCGCLNDAW KKFDESNCDT NVVIWTSMIS GFALHGQGKE AVELFELMLR KGIAPNHITF  600
LAVMNACSHA GLFEEGSIYF KLMQTVYGLE PMIEQYTAMV DLFGRAGRLN EAKGFILENG  660
ISHLTVVWKS LLSSCRLHKN VEVGKWVCER LMELEPLDTS CYVLLSNILS ADDHWEEAAK  720
ARTLMFQRSV TKLPGQSWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-511966532332PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673659.10.0pentatricopeptide repeat-containing protein At2g22070-like
TrEMBLA0A067JVN40.0A0A067JVN4_JATCU; Uncharacterized protein
TrEMBLA0A2C9USG80.0A0A2C9USG8_MANES; Uncharacterized protein
STRINGLus100206520.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-35sequence-specific DNA binding transcription factors