PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020478
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 380aa    MW: 40731.8 Da    PI: 6.7859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020478genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-14168209854
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er+RR+++N++f+ Lr+l+P++     +K++Ka+++  A+ YIk+L
  Lus10020478 168 TERQRRQQVNDKFSALRSLIPNP-----TKNDKASVVGDAIGYIKEL 209
                  6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-11161209No hitNo description
SMARTSM003531.2E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.63E-15166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11168209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLNDPPPLPP PYPPSTPDLN LFNLPMSSLL PNSSISFANN NPKPLMGGGG GGGGYGGWDL  60
PISDGAQSAS SVHYDPLSYL NLPPQPPLFR ELFQYLPSHG GGNSLLGGGG LVDIHGGEGS  120
SGGGGGIYPD GDGSSSQQLD SSVLEFNWDM ACLAKGRAAG RMAKPLTTER QRRQQVNDKF  180
SALRSLIPNP TKNDKASVVG DAIGYIKELL GTVEELKLLV EKKRCSRWRS KRNKTDHQQG  240
GEIDAMNEGS EMKAANSNGS GGHGTDQLDK SCNGSTLRSS WLQRKSKDTE IDVRIIEDEV  300
TIKLVQRKKI NCLLFVSKVL DELHLDLHHV AGGHVGDYYS FLFNTKICEG SSVYASAIAN  360
KLIEVVDKQY ASTPSISCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160172RMAKPLTTERQRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663258.11e-150transcription factor bHLH91-like
TrEMBLA0A2C9V5X41e-146A0A2C9V5X4_MANES; Uncharacterized protein
STRINGLus100204780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-71bHLH family protein