PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020170
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 272aa    MW: 29279.6 Da    PI: 6.5144
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020170genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.6e-141091571058
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                  + +NRe+ArrsR+RK+a +  Le  v++L++e  +L k+l+  ++++ +
  Lus10020170 109 MVSNRESARRSRRRKQAHLTDLEIQVEQLTGESASLYKQLSDATQQYRN 157
                  789**********************************999999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-8100164IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.26E-10108155No hitNo description
PfamPF001705.8E-11109156IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-10109157No hitNo description
PROSITE profilePS502179.105112154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEDQKPRDLK RRASDGGLMV KQGFVNSASQ PAAAAAYSVR DDKFRGEFQG FANEIEGFFG  60
DIYSDDLFTF KTPDSINGFA ACGGLDSLLW SHNVNSKEYN NSVPINSQMV SNRESARRSR  120
RRKQAHLTDL EIQVEQLTGE SASLYKQLSD ATQQYRNADT NHRVLKSDVE ALRAKVKLAE  180
DMVARGSLTC SMNLLLPNNP PPPIPPHQVL NSHITLSPRV ANVSPTITVQ GGGGGGGDDV  240
TYGGIGNPSS ISNHGVLSEA AVSCASTDIW P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123RRSRRRKQ
2118123SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382195.11e-63basic leucine zipper 9
SwissprotQ9FUD33e-42BZIP9_ARATH; Basic leucine zipper 9
TrEMBLU5GEY13e-62U5GEY1_POPTR; Uncharacterized protein
STRINGLus100201700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-28basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]