|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lus10020085 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
Family |
MYB |
Protein Properties |
Length: 329aa MW: 36981.2 Da PI: 6.7879 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lus10020085 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+d+++++G g+W+t + g+ R++k+c++rw +yl
Lus10020085 16 KGPWTPEEDQKLIDYIQLHGYGNWRTLPLNAGLQRCGKSCRLRWTNYL 63
79********************************************97 PP
|
2 | Myb_DNA-binding | 48.5 | 2.1e-15 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e +++++ l ++ W++Ia++++ gRt++++k++w+++
Lus10020085 69 RGRFSFEEEEAIIQLHGILRNK-WSAIASRLP-GRTDNEIKNYWNTH 113
89********************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MGRSPLRTCE KNGLKKGPWT PEEDQKLIDY IQLHGYGNWR TLPLNAGLQR CGKSCRLRWT 60 NYLRPDIKRG RFSFEEEEAI IQLHGILRNK WSAIASRLPG RTDNEIKNYW NTHIRKRLLR 120 MGIDPVTHNP RLDLLDLSAI LGSSFSSSQP NISRLLCLVN PEILHLATSL VSSSSSPETQ 180 LQNQTQTQTG GIYDQHYQPM VNPEFQDMTA TTLATTATIT NVPRVEVGPS DNWQRSYTSD 240 SYNDHLHDYY PGTSSFDDHQ TGNTIMDLSA AAASVFSTPS SSPTRLNSNS TLNNFNAGSS 300 TEDERDSYCS NMLRFEMPPS ILDVSNFM*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | JX174448 | 0.0 | JX174448.1 Linum usitatissimum clone LuBAC395P20, complete sequence. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]
|