PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36981.2 Da PI: 6.7879 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t + g+ R++k+c++rw +yl Lus10020085 16 KGPWTPEEDQKLIDYIQLHGYGNWRTLPLNAGLQRCGKSCRLRWTNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2.1e-15 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ l ++ W++Ia++++ gRt++++k++w+++ Lus10020085 69 RGRFSFEEEEAIIQLHGILRNK-WSAIASRLP-GRTDNEIKNYWNTH 113 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.601 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.02E-12 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.04 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRSPLRTCE KNGLKKGPWT PEEDQKLIDY IQLHGYGNWR TLPLNAGLQR CGKSCRLRWT 60 NYLRPDIKRG RFSFEEEEAI IQLHGILRNK WSAIASRLPG RTDNEIKNYW NTHIRKRLLR 120 MGIDPVTHNP RLDLLDLSAI LGSSFSSSQP NISRLLCLVN PEILHLATSL VSSSSSPETQ 180 LQNQTQTQTG GIYDQHYQPM VNPEFQDMTA TTLATTATIT NVPRVEVGPS DNWQRSYTSD 240 SYNDHLHDYY PGTSSFDDHQ TGNTIMDLSA AAASVFSTPS SSPTRLNSNS TLNNFNAGSS 300 TEDERDSYCS NMLRFEMPPS ILDVSNFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020085 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX174448 | 0.0 | JX174448.1 Linum usitatissimum clone LuBAC395P20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596793.1 | 1e-126 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 1e-105 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A2C9U827 | 1e-125 | A0A2C9U827_MANES; Uncharacterized protein | ||||
STRING | Lus10020085 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-100 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020085 |
Publications ? help Back to Top | |||
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