PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019773
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 477aa    MW: 53192.9 Da    PI: 6.3967
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019773genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.53.2e-132504731374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkfshl 96 
                  l++lL +cA++v+sg+ e+a+  L ++s+lasp+gd+mqR+aayfteALa r++  ++++l kal++++t+ ++  see+ ++klf+e++P+lk+s++
  Lus10019773  50 LIQLLRTCANHVASGSIENANISLGHISNLASPNGDTMQRIAAYFTEALADRIMLkTWPGLHKALNSTRTTCSSaASEEMLVQKLFFELCPFLKLSYV 147
                  6899************************************************98769********777666555599********************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  ++NqaI+ea+ege+++Hi+D++  +++QW+ Ll++L++Rpegpp+lRiTg+++    +ke l ++g rL + Ae+l++pf+fn  +  +le+l+le L
  Lus10019773 148 ITNQAIVEAMEGEKMIHIVDLNSFEPAQWIELLRTLSARPEGPPHLRITGIHE----HKEVLDRMGARLVEEAEKLDIPFQFNS-IPGKLENLDLECL 240
                  *****************************************************....9**************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrll...................................................desvsleserdevLklvkslsPkvvvv 241
                  rvk+gEalaV++vlqlh+ll                                                   ++s++ + +  ++L+ +  lsPk++v+
  Lus10019773 241 RVKTGEALAVSSVLQLHSLLatdeqevvarglpsaarnhvqkfmqtnrsqktlsewlendsspdsalsplsSSSMAPSPTMGTFLSSLCALSPKIMVI 338
                  *********************************************************************96444444447899*************** PP

         GRAS 242 veqeadhnsesFlerflealeyysalfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                  +eqe+dhns+s+ er++ea+++y+alfd+le++   pr+  er+kvE++l+g+ei+n++aceg er+erhe+lekW  r+e aGF+ vpls++ + qa
  Lus10019773 339 TEQESDHNSHSLTERVAEAMNFYAALFDCLESSadHPRALLERQKVEKMLFGKEIKNIIACEGIERKERHEKLEKWILRVELAGFGRVPLSYDGMWQA 436
                  ******************************7771245666********************************************************** PP

         GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + ll+ ++  gy+++e++g+l+++W+drpL+svSaWr
  Lus10019773 437 NKLLQSYNYGGYKIKEKQGCLLICWHDRPLYSVSAWR 473
                  ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.85824453IPR005202Transcription factor GRAS
PfamPF035141.1E-12950473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGNVQEDKS TISSSSSPLQ LFPWMSLSPA GAGSPFLSWD LQPEERGLCL IQLLRTCANH  60
VASGSIENAN ISLGHISNLA SPNGDTMQRI AAYFTEALAD RIMLKTWPGL HKALNSTRTT  120
CSSAASEEML VQKLFFELCP FLKLSYVITN QAIVEAMEGE KMIHIVDLNS FEPAQWIELL  180
RTLSARPEGP PHLRITGIHE HKEVLDRMGA RLVEEAEKLD IPFQFNSIPG KLENLDLECL  240
RVKTGEALAV SSVLQLHSLL ATDEQEVVAR GLPSAARNHV QKFMQTNRSQ KTLSEWLEND  300
SSPDSALSPL SSSSMAPSPT MGTFLSSLCA LSPKIMVITE QESDHNSHSL TERVAEAMNF  360
YAALFDCLES SADHPRALLE RQKVEKMLFG KEIKNIIACE GIERKERHEK LEKWILRVEL  420
AGFGRVPLSY DGMWQANKLL QSYNYGGYKI KEKQGCLLIC WHDRPLYSVS AWRPRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-564447512380Protein SCARECROW
5b3h_D2e-564447512380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021682816.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2C9W3130.0A0A2C9W313_MANES; Uncharacterized protein
STRINGLus100197730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]