PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019455
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 235aa    MW: 25396.2 Da    PI: 4.3463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019455genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1755104255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+e+r+p+    + r++lg+f t e+Aa+a++ a+++l+g
  Lus10019455  55 IYRGVRLRS-TGKWVCEVREPN---SKSRIWLGTFPTVEMAARAHDVAALALRG 104
                  69****999.9******99982...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-2954114No hitNo description
PfamPF008474.1E-1354104IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2055114IPR016177DNA-binding domain
PROSITE profilePS5103221.37755112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3055114IPR001471AP2/ERF domain
SMARTSM003801.4E-2955118IPR001471AP2/ERF domain
PRINTSPR003673.0E-85667IPR001471AP2/ERF domain
PRINTSPR003673.0E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASSSTNELL SSQQLSPTTA GRSAISDEEV VMKLASSHPK KRAGRKKFTE TRHPIYRGVR  60
LRSTGKWVCE VREPNSKSRI WLGTFPTVEM AARAHDVAAL ALRGTSACLN FEDSVSRLRI  120
PDSTDTREIQ RAAAEAAEAF RPPELLQAAS SSDTAAVVVG DDDKGAPEED NNNNMLFYME  180
EEEEDEASMF GMPGLLANMA EGMLLPPPPR DDMAGGGDDD DDDAGDVSLW SFSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019455
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830708.11e-81PREDICTED: dehydration-responsive element-binding protein 1D
SwissprotQ9FJ931e-77DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2I4FGE63e-80A0A2I4FGE6_JUGRE; dehydration-responsive element-binding protein 1D
STRINGLus100194551e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-55C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]