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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10019407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 206aa MW: 22683.5 Da PI: 8.8586 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 203.6 | 7.5e-63 | 7 | 195 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee................lleelkveeenlksnv 86 +eq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhCt+l svn+a a q + s+ +++ +++ + + ++++++ + ++ Lus10019407 7 MVAEQLCYIPCNFCNIVLAVSVPCSNLMDIVTVRCGHCTNLWSVNMAAAFQYSLSASRAQQQQQQPadhlslhhhqkggnynVYQAGGSTNNDQQYYN 104 5689******************************************9987655555544444444447899999999998884444444444333333 PP YABBY 87 ......ekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++s+ +s+++ kl++ ++ p + + v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aa nWahfP+ihfgl Lus10019407 105 ggggssSSSSSSAKSIPTAKLTTRTSPLPPLQNRiVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAANNWAHFPHIHFGL 195 100000333333334444444443333333333369*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.6E-69 | 8 | 195 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.07E-8 | 130 | 189 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-4 | 149 | 187 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.22E-4 | 149 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGSCIEMVAE QLCYIPCNFC NIVLAVSVPC SNLMDIVTVR CGHCTNLWSV NMAAAFQYSL 60 SASRAQQQQQ QPADHLSLHH HQKGGNYNVY QAGGSTNNDQ QYYNGGGGSS SSSSSSAKSI 120 PTAKLTTRTS PLPPLQNRIV NRPPEKRQRV PSAYNQFIKE EIQRIKANNP DITHREAFST 180 AANNWAHFPH IHFGLMLESN KKATY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10019407 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022144840.1 | 5e-79 | axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 8e-76 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U8H955 | 6e-77 | A0A1U8H955_CAPAN; axial regulator YABBY 5-like isoform X3 | ||||
STRING | Lus10019407 | 1e-154 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-76 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10019407 |
Publications ? help Back to Top | |||
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