PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019388
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 438aa    MW: 50171.2 Da    PI: 4.6989
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019388genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.31.7e-12200277286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W ++ + +L+e+  e+  +l+r +l+  +W ev++k+ ++ g+er+  qC+e +++l+kry+k++  +kk        ++++++++
  Lus10019388 200 WNDEDTSVLLEVWGERFLELGRHSLRSEDWVEVASKVsEALGIERTEGQCREMMDSLKKRYRKEQGKSKK--------WSFYRKMD 277
                  *************************************7889*********************98776665........88999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-19199279No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTTPPVLASD TNNGTSITTT PSSTPRSQPV LNSYRRHTPH KLHPNAAPSI HIPQPTTPAT  60
ESQLDSAEER KQHRSDLTTY DMMDTEDTSR HKPHRSPNKL GLGLVLTTTI DQPTTTDQHR  120
AEEYHQLYLE KGGGRGTEKF TATELPTQIL HTETPHCEEE EEDCFTVKQL EKPSVSNYEF  180
LARRRRNNNH SSESDFSGVW NDEDTSVLLE VWGERFLELG RHSLRSEDWV EVASKVSEAL  240
GIERTEGQCR EMMDSLKKRY RKEQGKSKKW SFYRKMDMLM RRQENRNVRS LCWGLDSGEY  300
VFMDTGFYLQ RANGNDEMRD SPCDSEEDDD NTASGDTDMF KGLTVLAESF RKFGEIYKRI  360
ESVKKEQMLE LERMRGDFQA ELELQRKQIL EIALAEIAKI RDEDDEDDDD TDPESNVNKE  420
RKAEDESGGD DSGVNIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019388
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076661.12e-77trihelix transcription factor ASIL2
RefseqXP_012076662.12e-77trihelix transcription factor ASIL2
RefseqXP_020536412.12e-77trihelix transcription factor ASIL2
RefseqXP_020536413.12e-77trihelix transcription factor ASIL2
TrEMBLA0A067KF824e-76A0A067KF82_JATCU; Uncharacterized protein
STRINGLus100193880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-55Trihelix family protein