 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10019269 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
C2H2 |
| Protein Properties |
Length: 473aa MW: 53555.6 Da PI: 4.6785 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10019269 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00054 | 161 | 177 | 1 | 17 |
EEETTTTEEESSHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLk 17
y+Cp+Cgk+++ + L+
Lus10019269 161 YVCPNCGKRYNALDALQ 177
9**********999886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MMSLEPWNRL VKLAARAFYD DYTTKGENQP KIARSDNRGM AVVILDALTR RQWVREEDLA 60
KDLKMHTKQI RRTLRFFEEE KLVTRDQRKE TAKGAKQYSA AVAATTEVQN GKEGEDKVKL 120
LLHSYCCLDY AQIYDVVRYR LHRLKKKLRE ELEEKNTIQE YVCPNCGKRY NALDALQLVS 180
MVDEYFHCEN CNGELVAEND KLSVADGDTD DNARRRRREK LKDLLQKMET QLKPLTEQLN 240
RVKDLQVPDF GNLLAWEARA IAAGRDLNGS NSNDPSKATQ GYGAPLPYLG ETKVEVAFSG 300
TDGKEEDTKP DNAGSGLKVL PPWMIKQGMN LTKEQRGEIK HESKMDGDIS SSAFSDDKKS 360
AVVDEKQSIQ DEYVKAYYAA ILKQQEELEA ARKQEELRAA PNLNAPPPES SPERQVGMKS 420
KREEDDEEDD DWEDGAAAGG NGSSEGYRLN DLNEEAKATP EDEDDDIDWE EG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5fyw_W | 6e-13 | 10 | 294 | 12 | 244 | TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA |
| 5fz5_W | 6e-13 | 10 | 294 | 12 | 244 | TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA |
| 5sva_h | 6e-13 | 10 | 294 | 12 | 244 | Transcription initiation factor IIE subunit alpha |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 142 | 148 | RLKKKLR |
| 2 | 214 | 219 | RRRREK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ888502 | 1e-40 | HQ888502.1 Linum usitatissimum clone GMU2AYZ01AXRGQ microsatellite sequence. |
