PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019260
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 315aa    MW: 34190.4 Da    PI: 10.0906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019260genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-112878146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT++E+  l+ +v ++G+g W+tI    +       R+  ++k++w++
      Lus10019260 28 KQKWTADEETALKAGVVKHGTGKWRTILMDPQfssvlCLRSNVDLKDKWRN 78
                     79***********************************66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3852384IPR017930Myb domain
SuperFamilySSF466891.72E-142585IPR009057Homeodomain-like
SMARTSM007177.4E-62782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-112779IPR009057Homeodomain-like
PfamPF002491.3E-72878IPR001005SANT/Myb domain
CDDcd116601.06E-172980No hitNo description
SMARTSM005261.5E-16142208IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.109144213IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.1E-14145222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.2E-8146206IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-12146215IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDEEEGQKY CIPPRRGRDI VWLMGAPKQK WTADEETALK AGVVKHGTGK WRTILMDPQF  60
SSVLCLRSNV DLKDKWRNIN VTAIWGSRQK AKLALKGGGS LTPKRDESSS TPTSVIHYNE  120
EVAADPKPLA ALGGAPLSRG SKELLPKLGS LILEAITTLR EPSGSDRASI AMYIEEKKLL  180
AVPNLRKLLA GKLKLLTASG KLVKVKHKYR IAPSSPISEG MKSSPLKNTL NLENINTKIV  240
TKSQVQQEIL RIQGVTAEEA AAAAAKAVAE AEVAIAEAAE AAREAERAEA EAEACQVFAE  300
AAKKAYRYRA RQSW*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633738.11e-106telomere repeat-binding factor 2
RefseqXP_021633739.11e-106telomere repeat-binding factor 2
SwissprotQ9FJW58e-62TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A251JI531e-105A0A251JI53_MANES; Uncharacterized protein
TrEMBLA0A251JIW01e-105A0A251JIW0_MANES; Uncharacterized protein
STRINGLus100192600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-52MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]