PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019086
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 315aa    MW: 35820.1 Da    PI: 8.9645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019086genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l+  v+++G g+W+t + + g+ R++k+c++rw +yl
      Lus10019086  9 RGPWSSEEDQKLLSFVQLHGHGSWRTLPPKAGLQRCGKSCRLRWINYL 56
                     89********************************************97 PP
2Myb_DNA-binding55.51.3e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
      Lus10019086  62 RGKFTLHEEQTIIQLHALLGNR-WSAIAAHLP-RRTDNEIKNHWNTHL 107
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.587456IPR017930Myb domain
SuperFamilySSF466891.31E-296103IPR009057Homeodomain-like
SMARTSM007171.8E-11858IPR001005SANT/Myb domain
PfamPF002497.5E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-221063IPR009057Homeodomain-like
CDDcd001677.02E-91156No hitNo description
PROSITE profilePS5129426.02657111IPR017930Myb domain
SMARTSM007171.1E-1661109IPR001005SANT/Myb domain
PfamPF002494.8E-1662107IPR001005SANT/Myb domain
CDDcd001672.93E-1164107No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2664111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDMSAGLRRG PWSSEEDQKL LSFVQLHGHG SWRTLPPKAG LQRCGKSCRL RWINYLRPGI  60
KRGKFTLHEE QTIIQLHALL GNRWSAIAAH LPRRTDNEIK NHWNTHLKKR LSLMGIDPTT  120
HKSKTAALRR LDGGDPKNAS TLSHMAQWES ARLEAEARLV RESNLLRVDH HQQQLNPAHH  180
HHHDQVMLNK MSNSRLAPQA RCLDVLRVWQ NQHNNFEGHD GHHHDTNIYT WHSSSSPPWP  240
RLMESTLLDG GRASTTISSG ARGINLVGKS VAQVSNDDEA GDALFVDYWT RNDDCELFDL  300
QVDWNSTSWA AMDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2671115108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022755508.15e-95transcription factor MYB16-like
SwissprotQ9LE633e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2H5PT871e-93A0A2H5PT87_CITUN; Uncharacterized protein
STRINGLus100190860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.18e-91myb domain protein 106