PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019058
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 545aa    MW: 59237.5 Da    PI: 6.1264
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019058genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.3e-27223276155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W++ LH++Fv+av+q+ G +kA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  Lus10019058 223 KARVVWSNPLHKKFVDAVNQI-GFDKAVPKKILDMMDVEGLTRENVASHLQKYRL 276
                  68*******************.********************************8 PP
2Response_reg82.21.7e-27231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+++ ++ l+ +l+k +y +v+ + ++ +al++l+ek+  +Dl++ D++mp+mdG++ll++ ++e  ++p+i+v++h+e+e++ + +  Ga 
   Lus10019058  23 VLVVDDDKVCLRYLEMLLRKCHY-QVTGTNQALQALQMLREKKggFDLVMSDVNMPDMDGFKLLEHVEFEM-DIPVIMVSSHSEKELVYKGVTHGAV 117
                   89*********************.***************999999**********************9976.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  ee+ +
   Lus10019058 118 DYLLKPVRLEEVKN 131
                   *******9999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004487.1E-3221133IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.13E-3421144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-4021157No hitNo description
PROSITE profilePS5011041.86722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2423131IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.00E-2924136No hitNo description
Gene3DG3DSA:1.10.10.604.3E-29220281IPR009057Homeodomain-like
SuperFamilySSF466893.58E-19220281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-24223276IPR006447Myb domain, plants
PfamPF002492.0E-6225275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MATADSSGSG SLGGDFIPSL LRVLVVDDDK VCLRYLEMLL RKCHYQVTGT NQALQALQML  60
REKKGGFDLV MSDVNMPDMD GFKLLEHVEF EMDIPVIMVS SHSEKELVYK GVTHGAVDYL  120
LKPVRLEEVK NIWQHVVRKR KMNAKKNKSK SSSSPEQSNQ DDNNSGPPDN HGTGPPSSGS  180
SDPNGGKSSK KRKDNEGDEG DEEDNVSDEN GREENEESGT QKKARVVWSN PLHKKFVDAV  240
NQIGFDKAVP KKILDMMDVE GLTRENVASH LQKYRLYLKK MQVEKTERLP EIDELRFIRG  300
LKGGYQPAGI YDSPSTFQRR LLPSSGIIMQ QHKQPSSIFP SGESSFLFPS KHISLNNSTG  360
CLGSSSSSNI GVTAGSSPNH MMTLQPAPHN NIMTGGGGGA FGGQQRPLNQ GSPFGLMHHG  420
SSPNFDAVQL PKLPPTSFDF STGNLIGGNV IDDYSPSILN SLNNPLGAIM NSSAAPASGP  480
LNMLFDNAIA GGVTQTQNGY NNNNNYDCLD DMMTALIKRE QNEGLIIDPD LGLDAYQMGA  540
SPHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21221281363ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100190580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-47response regulator 12