PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018888
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 579aa    MW: 65206.9 Da    PI: 8.4606
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018888genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix621.4e-191691787
     trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                 m++ +r++  k+plWeevs+k+ e g++rs+k+Ckek+en+ k++k++k+g+  +++++  ++++f++lea
  Lus10018888  1 MDSIFRDSTPKAPLWEEVSRKLGELGYKRSAKKCKEKFENVYKYHKRTKDGRTAKHDGK--SYRFFQELEA 69
                 567799999********************************************975555..5******985 PP
2trihelix104.76.7e-33392477187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k evlaLi +r++++e+++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a
  Lus10018888 392 RWPKTEVLALIGLRTRLDEKYQENVPKGPLWEEISIEMMKLGYNRNAKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 477
                  8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.20E-17149No hitNo description
PfamPF138371.6E-12569No hitNo description
PROSITE profilePS500905.1221542IPR017877Myb-like domain
CDDcd122031.64E-26391456No hitNo description
PROSITE profilePS500906.771391449IPR017877Myb-like domain
PfamPF138372.3E-21391478No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDSIFRDSTP KAPLWEEVSR KLGELGYKRS AKKCKEKFEN VYKYHKRTKD GRTAKHDGKS  60
YRFFQELEAF DGQQQAVVIQ KKNHHHQQLP PPPPALPWGT AVTSHQIMGT IPSGGGNNNG  120
TSTTPVNGTS TPAANNTTMS INFTIMPPNH HQHQQSHLSP TVVTPAEPIS SSQPLNPSPQ  180
SVFHPSYHHH RGQHHNGHHG HRTVSVTAHL FSSSTSSSTD SDEQMEEKGM KSRKRKRKLK  240
DFFHRLTKDV IKKQEELQKR FLETVEKLDR ERLDREGAWR VQEMARINRE HEILIQERST  300
AAAKDAAVLA LLQKVSQGSV GGAQIDPPKV SLSSPPPPIP SQSTLVLQNH PTHVVAQKQK  360
PAPITTNVGG RIESNGEGVH TIATTTTTPS SRWPKTEVLA LIGLRTRLDE KYQENVPKGP  420
LWEEISIEMM KLGYNRNAKR CKEKWENINK YFKKVKESSR KRPEDSKTCP YFHQLDALYR  480
EKSKVIEQPI NNSTINSDTG YIEANPIRAV EPTTTIHHWL SPPPPPPSHH APEEEEDEDK  540
EDEDDYEDEE TDEDVENSVR GFEIVHNKPA MAVGGNGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRSAKKCKE
2232237RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066016.11e-131trihelix transcription factor GT-2
TrEMBLA0A067LFU71e-130A0A067LFU7_JATCU; Uncharacterized protein
TrEMBLA0A218Y0C11e-130A0A218Y0C1_PUNGR; Uncharacterized protein
TrEMBLA0A2I0JH921e-130A0A2I0JH92_PUNGR; Uncharacterized protein
STRINGLus100188880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-70Trihelix family protein