PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018887

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 642aa MW: 71150 Da PI: 6.8862

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018887	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90	2.7e-28	95	179	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r+++ k+plW++vs+km+e g++rs+k+Ckek+en+ k++k++k+g+ + + +t+++f++lea Lus10018887 95 RWPRQETVALLRIRTDMDATFRDASVKGPLWDDVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTAK--HDGKTYRFFQELEA 179 8******************************************************************95..66678****985 PP
2	trihelix	105.6	3.5e-33	466	551	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r++++++++++ k+plWee+s++m++ g+++s+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Lus10018887 466 RWPKVEIEALIDLRKNLDSKYQENGPKGPLWEEISARMKRIGYNKSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 551 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.021	92	154	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-18	94	179	No hit	No description
CDD	cd12203	1.14E-23	94	159	No hit	No description
PROSITE profile	PS50090	6.586	94	152	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.77	459	523	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-4	460	522	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-5	463	525	IPR001005	SANT/Myb domain
CDD	cd12203	7.86E-27	465	530	No hit	No description
Pfam	PF13837	8.6E-23	465	552	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MLVDSATDGG GGGAERTRTA PLAAPPPPPA TPPHFHQHQH QHQHQHQQHQ LSSNPPINSS 60 AAQFSAPAAA DAGQHVGSSS GGEEDRFGGG SGGNRWPRQE TVALLRIRTD MDATFRDASV 120 KGPLWDDVSR KMAELGYHRS SKKCKEKFEN VYKYHKRTKD GRTAKHDGKT YRFFQELEAF 180 DSHLSPPGAP PAPTQQHKQP GIQLQIPAVN PTPLPPPTTV PSTAAVLPPH TPSAINTATP 240 ATTTPAAVAT SLPPQSTNQQ QHQNPPSFSD LMSNSNSTSS STSTSSEAEI HGGGRSKRKR 300 KWQDLFERLM TEVVNKQEEM QRKFLEAIEK REKERISTEE YWRNQEMARI NREREILAQE 360 RSIAASKDAA VMSFLQKISD QHQIPIPIAV SAPPPAPPPQ QPPPVQLPQV IQANTPPPPP 420 PQPQQPPLPP STTTTTSLAP LPLQLTAETE HQVRNQPQSE SVSSSRWPKV EIEALIDLRK 480 NLDSKYQENG PKGPLWEEIS ARMKRIGYNK SAKRCKEKWE NINKYFKKVK ESNKKRPEDS 540 KTCPYFHQLD ALYRERQSNS VPILVQPEQQ WPPQPQVDAA ASQPTPPPLH PIHQQHRPDA 600 AMEDMESEDD EEDDDEEEGD DDHDGGGGYE LVSNKATSMN M*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MLVDSATDGG GGGAERTRTA PLAAPPPPPA TPPHFHQHQH QHQHQHQQHQ LSSNPPINSS  60
AAQFSAPAAA DAGQHVGSSS GGEEDRFGGG SGGNRWPRQE TVALLRIRTD MDATFRDASV  120
KGPLWDDVSR KMAELGYHRS SKKCKEKFEN VYKYHKRTKD GRTAKHDGKT YRFFQELEAF  180
DSHLSPPGAP PAPTQQHKQP GIQLQIPAVN PTPLPPPTTV PSTAAVLPPH TPSAINTATP  240
ATTTPAAVAT SLPPQSTNQQ QHQNPPSFSD LMSNSNSTSS STSTSSEAEI HGGGRSKRKR  300
KWQDLFERLM TEVVNKQEEM QRKFLEAIEK REKERISTEE YWRNQEMARI NREREILAQE  360
RSIAASKDAA VMSFLQKISD QHQIPIPIAV SAPPPAPPPQ QPPPVQLPQV IQANTPPPPP  420
PQPQQPPLPP STTTTTSLAP LPLQLTAETE HQVRNQPQSE SVSSSRWPKV EIEALIDLRK  480
NLDSKYQENG PKGPLWEEIS ARMKRIGYNK SAKRCKEKWE NINKYFKKVK ESNKKRPEDS  540
KTCPYFHQLD ALYRERQSNS VPILVQPEQQ WPPQPQVDAA ASQPTPPPLH PIHQQHRPDA  600
AMEDMESEDD EEDDDEEEGD DDHDGGGGYE LVSNKATSMN M*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018887

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	3e-32	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBank	AL606587	3e-32	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	3e-32	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	3e-32	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	3e-32	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBank	X68261	3e-32	X68261.1 O.sativa gt-2 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851634.1	1e-172	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-143	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2I4H660	1e-171	A0A2I4H660_JUGRE; trihelix transcription factor GT-2-like
STRING	Lus10018887	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10018887