PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018886
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 363aa    MW: 41690.4 Da    PI: 5.033
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018886genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix796.8e-2581178185
     trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+ +v++Li+a+++++e+ ++ +            +kk++W++vsk+m+ergf +sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Lus10018886  81 KWTETMVKLLITAVSYIGEEGSDCCggngkkrtfvalQKKGKWKSVSKAMSERGFLVSPQQCEDKFNDLNKRYKKLNDIIGRGtSCQVVENPALLDVI 178
                  7*********************966667788999999*********************************************9569999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-2279205No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGNASQGGM ISRVPPFVDL QGSMTRVHHH QAQQHPEGFA LTMGRAKNPN HSDDDNDDDD  60
DELNRTKKGS LSSSSHWQRV KWTETMVKLL ITAVSYIGEE GSDCCGGNGK KRTFVALQKK  120
GKWKSVSKAM SERGFLVSPQ QCEDKFNDLN KRYKKLNDII GRGTSCQVVE NPALLDVIDY  180
LSEKEKGDVR KILNSKHLFY EEMCSYHNGN RLHLPHDPAL QRSLQLALKS SRGNDDFDDV  240
DDDEDDDEDD DEDGDEVGGD CDGKRLRQED VDMNRACHEM SSKGGLVQKD WIESRTLQLE  300
EERLQIEVEN LELEKERFRW QRFSRKRDQE LEKLKMENER MKLENERMKL ELKCKVMSAD  360
FS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451284.11e-145uncharacterized protein LOC7467820
TrEMBLA0A2K2BEQ01e-144A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGLus100188860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-111