PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018842
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BES1
Protein Properties Length: 737aa    MW: 82266.5 Da    PI: 5.3501
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018842genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822138.85.5e-43741902118
       DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq..ss 97 
                  g++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+   + +++g sa+a++++slq  ++
  Lus10018842  74 GGRRCRPVEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQ--GSRSVGGPSATATQTTSLQtpQQ 169
                  78999****************************************************************5444..45899999999999999996666 PP

       DUF822  98 lkssalaspvesysaspksss 118
                  + s +l+ + + y++s+  +s
  Lus10018842 170 APSASLRGISTGYQTSMDYDS 190
                  777777878788887776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.8E-3874205IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.2E-28250328IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.6E-148251327IPR017853Glycoside hydrolase superfamily
PfamPF013735.1E-13256328IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-6287301IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.7E-6308326IPR001554Glycoside hydrolase, family 14
PfamPF013731.7E-71375720IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.803.2E-146376731IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.6E-148376729IPR017853Glycoside hydrolase superfamily
PROSITE patternPS005060382390IPR018238Glycoside hydrolase, family 14, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MATDMQRLVV TSEEDDEEEE IDMDVKEEDN RGKHIDAQLM AGIDGGMLSD SCDSQFQYHQ  60
QLQEQASTPG GGNGGRRCRP VEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSKSQGSRS VGGPSATATQ TTSLQTPQQA PSASLRGIST  180
GYQTSMDYDS GQLKSVFVPT PPPYDLSAGN VGDVDQARII PLVVGPEVTI DDKQIPDVQA  240
NLSEREFAGS AYVPVYVMLP LGVINMKCEL ADPDGLLQQL RALKSADVDG VKIDCWWGIV  300
EAHAPQEYNW HGYKKLCQIL RELRLKLQRS EVGDRLLGSL TSLLRVGMPF QGSYSGEERP  360
ESEWRQGQAV GMGEAVVIMS FHECGGNVGD DVCIPLPHWI AEIGRSNPDI FFTDKEGRRN  420
PECLSWGIDR ERVLRGRTAV EVYFDYMRSF RVEFDEFFED GIISLVEIGL GPCGELRYPS  480
NPVKHGWRYP GIGEFQCYDQ YMMQNLRKAA EARGHPFWAR GPDNSGSYNS RPHETGFFCD  540
GGDYDGYHGR FFLNWYSRVL VDHGDLVLSL AKLAFEGTCI TAKLPSIHWW YKTASHAAEL  600
TAGIYNSCNR DGYAAITAML KKHGIALNFC FSDFGMLNQP VDFAEGCADR DGLFWQVLNA  660
AWDVSIQIGS ESSFLSHDRL AYNKILDNVK PLNDPDGRHS LSFTYQRLSV ALMDRHNLLE  720
FESFVKRMHG KPPAYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6d_A1e-13325273011443beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613139.10.0beta-amylase 7 isoform X1
RefseqXP_021613140.10.0beta-amylase 7 isoform X1
RefseqXP_021613141.10.0beta-amylase 7 isoform X1
RefseqXP_021613142.10.0beta-amylase 7 isoform X1
RefseqXP_021613143.10.0beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A251KSS80.0A0A251KSS8_MANES; Beta-amylase
STRINGLus100188420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]