PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018761
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 312aa    MW: 33286.9 Da    PI: 6.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018761genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.3e-10140184554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR++i +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10018761 140 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 184
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.46E-11133189No hitNo description
SuperFamilySSF474593.79E-15133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.132135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGNPPGTPA DDFLHEILGL QSFVSADDAL AVASAAQAPM FLQLSSGDAS SAGMTGDPPG  60
FHGFPLGLSL DQGKGGFLNP DDASGSGKRF RDDVVFDGRV PAVQNVFHGQ PMPTSVPAAP  120
HAPTMRPRVR ARRGQATDPH SIAERLRREK IAERIRALQE LVPSVNKTDR AAMLDEIVDY  180
VKFLRLQVKV LSMSRLGGAG LVTEIPLSSV EVSNHENCGT LMEVKLLSSL VGCHRQDESV  240
RSQSAWEKWT SDGTERQVAK LMDENVGAAM QLLQSKALCI MPISLASVIY HTQPPLLDPQ  300
AVVKPGSNPP S*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898024.11e-141transcription factor UNE12 isoform X1
SwissprotO227681e-107UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067JPB11e-137A0A067JPB1_JATCU; Uncharacterized protein
STRINGLus100187610.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]