PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018728
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 297aa    MW: 34341.3 Da    PI: 5.3508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018728genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-055275123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 y+C+ Cg+ ++++ +Lk+H r  H
  Lus10018728 52 YVCGVCGRKCKTNLDLKKHFRQlH 75
                 9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.29E-54580No hitNo description
SMARTSM003550.00925275IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.995280IPR007087Zinc finger, C2H2
PROSITE patternPS0002805475IPR007087Zinc finger, C2H2
CDDcd061671.29E-1066206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAENFGEVIE MSAYANRHAF VHLPQWVVED RRERRQQDIL ERKGIVSSTE PYVCGVCGRK  60
CKTNLDLKKH FRQLHERERQ KKVNRMKSLK GKKRQKYKER FISGNDKYNN EARRLLTPKA  120
GYGLAAELRR AGVYVKMVED KPQAADWAVK KQIEHSMSRG VDWVVLVSDD SDFRGILMRA  180
RESRLGTVVV GDRDRALGRH ADLWVPWIGV ENGDVSEQDL VPKRRTSEDS DDDDDECDSV  240
SHFAEEDVGY YEWSDVDTVV EELTGVRRIS MFSEEEGDYD QLLDSDDEDD SFLHHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662197.11e-149uncharacterized protein LOC110651241
TrEMBLA0A2C9VYK81e-143A0A2C9VYK8_MANES; Uncharacterized protein
STRINGLus100187280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-119C2H2-like zinc finger protein