PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018724
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 219aa    MW: 24172.5 Da    PI: 7.993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018724genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-13621021055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Lus10018724  62 QRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 102
                  79******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-1462106No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1662110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1062102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1662124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSWISCAGAR ACELRSYLRW KRGLATSTLD YEETIVNRLK QRTYSAGLGT CNAETEPCCV  60
CQRRRSRINE KMKALQNLIP NSNKTDKASM LDEAIEYLKQ LQLQVQMLTL RNGLSLHPMC  120
LPPGVLQPMQ LPLTGLSFEE GNTNGLLTDS TLTAGSFSAT EQPHLQTGHN LPHNQCTVSN  180
GQPSGTNLTA SENPFPFEQP YQVLYESLHL TSSGKVKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068320.16e-61transcription factor SPATULA isoform X1
TrEMBLA0A067KZV71e-59A0A067KZV7_JATCU; Uncharacterized protein
TrEMBLA0A3N7EIF62e-59A0A3N7EIF6_POPTR; Uncharacterized protein
TrEMBLA0A3N7EN442e-59A0A3N7EN44_POPTR; Uncharacterized protein
TrEMBLA0A3N7FIQ81e-59A0A3N7FIQ8_POPTR; Uncharacterized protein
TrEMBLB9GNU61e-59B9GNU6_POPTR; Uncharacterized protein
STRINGLus100187241e-161(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-36bHLH family protein