PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018697

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 210aa MW: 22543.3 Da PI: 8.3929

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018697	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92	7.2e-29	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C ++Cvl+ + p++q +++ +++k+FG+s +l++++++p+ +r+++++sl++eA+ r+ +Pv+Gavg++++ +++++q++++ Lus10018697 2 SCNGCRVLRKGCGENCVLRSSLqwiptPQAQGNATLFLAKFFGRSDLLSFISSVPDPQRPALFQSLLFEACGRTVNPVNGAVGLLWSRNWHVCQAAVD 99 6**********************999999***************************************************************99 PP DUF260 94 lallk 98 ++l++ Lus10018697 100 TVLAG 104 88775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.258	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRVLR KGCGENCVLR SSLQWIPTPQ AQGNATLFLA KFFGRSDLLS FISSVPDPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSRN WHVCQAAVDT VLAGGSLHPL PGIAPPNFDE 120 SDDSFSAAGF AAHQLRPAIL AITGGNQNLS SSSSTSEYRR RHNASLVGGG NERRINNRDV 180 RASFFAEESE TTTFESTGGD RKKLLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018697

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068238.1	3e-88	LOB domain-containing protein 38
Swissprot	Q9FN11	7e-60	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	7e-60	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A067LAV8	6e-87	A0A067LAV8_JATCU; Uncharacterized protein
STRING	Lus10018697	1e-152	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-61	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Lus10018697

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]