PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018649
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 449aa    MW: 48844.1 Da    PI: 7.2502
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018649genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.9e-28178232156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  Lus10018649 178 KMKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIHCLTRHNVASHLQKYRSH 232
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.981175234IPR017930Myb domain
SuperFamilySSF466892.69E-18176235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-27176235IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-26178232IPR006447Myb domain, plants
PfamPF002494.9E-8181230IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLAVSVAAPL GVDESSFQQG KMMMEEVDNF SDRIFCDGNL LLMESIDFDD LFVGIDDGDV  60
LPGLEMDSEI LADFSEESEV IIHDLATRMT GFTETVANEG HDVVIIIGDG KGSNKDEKGT  120
GKEEVGPAAS PSSSASVVMN PPVSDGVRSG GEKRKKSSTA SSHQSNIGSK NDNQGKRKMK  180
VDWTPELHRR FVQAVEQLGV DKAVPSRILE LMGIHCLTRH NVASHLQKYR SHRKHVLARE  240
AEAASWSHRR QMYGAAGVTS HSKGLDVNHH HHHRKVHPHR QLWPHAPATV GFPPMHHHLV  300
RPLHVWGHPH HHHQPLWHRN QRVGATGVGL TPSTGMDSFP QAAAAAAVRP PPTRFTTPPI  360
LSIIPPPHVM YKPGHGVPPP ATSASSPNQS FDFHPSNESI DAVIGDVLSN PWLPLPLGLK  420
PPAVDTVLVE LHRGGGHRFS GTPLPRNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14175236263ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153179RKKSSTASSHQSNIGSKNDNQGKRKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018649
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100186490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-52GBF's pro-rich region-interacting factor 1