PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018498
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 473aa    MW: 51861.9 Da    PI: 5.3077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018498genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.94.9e-84564632373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalkl..fsevsP 89 
                  ++lLl+cA a++s++ +laq++++ l++ as ++dp+qRl++ f++AL +r a+ +++ ++ +                   +++++++l  ++++ P
  Lus10018498  56 EKLLLHCASALESKEWTLAQQVMWVLNNVASLSDDPNQRLTSWFLRALISRAAKVCPTAMHHFDGGGGGGGGsssasfgsRRRQMTVTELtgYVDLIP 153
                  689******************************************************99999865332211111122443333344444488****** PP

         GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                  +++f++ + N a+l+a++g+++vH++Df++++++QWp+L++aLa+RpegppslR+T+ +   ++    + + ee+g rL++fA+  +v+fefn++   
  Lus10018498 154 WHTFGFCASNGAVLKAIQGCSKVHVLDFSVTHCVQWPTLIDALAKRPEGPPSLRLTVPSVRPPVpplLNVSCEEVGLRLSNFAKFRDVEFEFNIIdgs 251
                  ********************************************************97776666779999***************************9 PP

         GRAS 182 ..................vakrledl.....eleeL..rvkpgEalaVnlvlqlhrlldesvs.leserdevLklvkslsPkvvvvveqeadhnsesF 253
                                      +   +l     ++ +L   ++++E+++Vn++  l +l d++ s + s r e+L+++ +l+P +vvvv+++ad+n +s+
  Lus10018498 252 fdplasciksssdyfhryC-E---SLlttltDPGQLssLIREDEVIVVNCQNWLRYLSDDESSaIGSLRGEFLRTIFGLNPAIVVVVDEDADLNMSSL 345
                  9999998777666644421.2...113334545555322777**************998766515569****************************** PP

         GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                    r++++++y +  fd+le+ lp+es++r+ +E   +g +i+nv+++eg +r+er e+ +k  +r+++aGF+++++ e++ k++k+ll +++  g+ +
  Lus10018498 346 TMRITNCFNYLWIPFDALETFLPKESSQRNEYESD-IGHKIENVISHEGVQRIERLESGAKLCQRMKNAGFSSITFCEDTIKEVKSLLDEHA-SGWGM 441
                  ***********************************.********************************************************.88999 PP

         GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                  ++e++ lvl+Wk+++ v+++ W
  Lus10018498 442 KKEEDMLVLTWKGHNSVFATTW 463
                  9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.62129445IPR005202Transcription factor GRAS
PfamPF035141.7E-8156463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MKTEFRANPS SISLQTPNKN LFTSPTPPQS AALPSAGISG ALNGCSLGSL DGACIEKLLL  60
HCASALESKE WTLAQQVMWV LNNVASLSDD PNQRLTSWFL RALISRAAKV CPTAMHHFDG  120
GGGGGGGSSS ASFGSRRRQM TVTELTGYVD LIPWHTFGFC ASNGAVLKAI QGCSKVHVLD  180
FSVTHCVQWP TLIDALAKRP EGPPSLRLTV PSVRPPVPPL LNVSCEEVGL RLSNFAKFRD  240
VEFEFNIIDG SFDPLASCIK SSSDYFHRYC ESLLTTLTDP GQLSSLIRED EVIVVNCQNW  300
LRYLSDDESS AIGSLRGEFL RTIFGLNPAI VVVVDEDADL NMSSLTMRIT NCFNYLWIPF  360
DALETFLPKE SSQRNEYESD IGHKIENVIS HEGVQRIERL ESGAKLCQRM KNAGFSSITF  420
CEDTIKEVKS LLDEHASGWG MKKEEDMLVL TWKGHNSVFA TTWVPGNGLD QE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-494946581474Protein SHORT-ROOT
5b3h_B5e-504946527420Protein SHORT-ROOT
5b3h_E5e-504946527420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674577.10.0scarecrow-like protein 32
TrEMBLA0A2C9UPS00.0A0A2C9UPS0_MANES; Uncharacterized protein
STRINGLus100184980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-107GRAS family protein