PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018440
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 997aa    MW: 107779 Da    PI: 7.1416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018440genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-16333432198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++  L++gD+v+F++ +  +++lv+
  Lus10018440 333 FEKMLSASDAGRVGRLVLPKKCAETYlpPISQAEGLPLKVHDYTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMFLQAGDIVTFSRLD-PGGKLVM 428
                  89**************************666778888***************9989999999***9.********************665.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Lus10018440 429 GFRK 432
                  7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359060117IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF1019361.15E-18330432IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-27330434IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-21331432No hitNo description
PfamPF023624.6E-13333432IPR003340B3 DNA binding domain
SMARTSM010191.3E-17333433IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264333434IPR003340B3 DNA binding domain
PROSITE profilePS5105010.997575657IPR011124Zinc finger, CW-type
PfamPF074961.5E-5580611IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MTTPSPSPPP PPPQPPSTPH PPPPTAPAPP AWAKCFNSVC SEKKSKKAWR LRSGEQAELC  60
DPCFATYEEG RFCETFHLHD AGWRCCESCK KRVHCGCIVS VSAFTLLDTG GIECVTCARK  120
HAVVTSSNPT WQPAFYYHRY IADRGKDASV KKLNYLAKSG PVPWRQAPSL FNSSITQTVP  180
HPMIHSEADR LSATEKLSSA SLEKGKTDNS VIGNLKHSSG DKIENGHPGP SNVERQSSSI  240
REDSSTSQIG FGRTYTSINE TKGKQPGCST IPIPATSSPL VVQNGGGDAP VEPRPRGRPG  300
GKSQLLPRYW PRFTSEELQR ISGKTNAVIT PLFEKMLSAS DAGRVGRLVL PKKCAETYLP  360
PISQAEGLPL KVHDYTGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMFLQ AGDIVTFSRL  420
DPGGKLVMGF RKAINVNSPS SEYPAISNAQ DSESTNPPAG TSGNGEGEVS DRPPWYKVDK  480
SDYIATPSEV IAAKPSSKKR KNGSSVSGSK GKSLKLDSDD LIQLQVTWEE SQGLFRPPAE  540
HPIPSSVVSI DGYDFEEFEE APVIGKPTIL ATDKVGNKFQ WTQCEDCSKW RKIPLDALLP  600
FQWTCSRNLW DLEKYIYIGT LRPLMAQIAC IPSLVLNCDS NALSFRASCV ADQESSRELL  660
KDLLPPQPLA APKKLKAAAI PEKDGGEAAV AAGGGTDVIL EEGGAMTTKH PRQKPGCSCI  720
VCIQPPSGKG PKHKPDCTCT VCEAVKRRFT TQQIKRNERK EAESQQQKQL PPPAHQLPET  780
TGGHDDDDDD AADPPNSGET GNNSSSSDQA SKRMKLASSS PFKGQIDLNI QPEREEEALP  840
ASDSASTKML HNVEEMSASR QQKVSSSSSP TYGSDGARQP EQTTSPPNDA SQLASKLIFD  900
AALQMKTVSQ TYGNDGNNTQ QLATGDQQTL VAAGEGKSTE SDDSSLAKPT EEALPASASP  960
QQLLDSNLPN NNNPPTPPKP QSTTSLDCQT RVTMTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-623114352126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636723.10.0B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2P2MA320.0A0A2P2MA32_RHIMU; Uncharacterized protein
STRINGLus100184400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-143HSI2-like 1