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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-other | ||||||||
Protein Properties | Length: 246aa MW: 28307.7 Da PI: 9.1519 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.4e-20 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ q+k+WFqN+R+++k Lus10018360 62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRELGLEPLQIKFWFQNKRTQMK 117 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-20 | 43 | 119 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 46 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-18 | 60 | 123 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-18 | 62 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.55E-17 | 62 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MFQPNMFDNP HIFKMDEMGK PSRDFFDDYD TKSGTETIGT GGAPSGEDDP DGSPSQQPPN 60 KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRELGL EPLQIKFWFQ NKRTQMKAQH 120 ERHENSILKA ENDKLRLENN RYKEALSNAS CPNCGGPAAL GEMSFDEQQL RIENARLRDE 180 IDRISAIAAK YVGKPITSFS HQSSLELGTA TFGGPQSPPP RPRPRHFRRV TFFFWGNVRT 240 RHRLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018360 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884145.1 | 1e-103 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_015884152.1 | 1e-103 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_021887377.1 | 1e-103 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like | ||||
Swissprot | Q93V99 | 1e-95 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A061GGE7 | 1e-101 | A0A061GGE7_THECC; Protodermal factor 2 isoform 1 | ||||
TrEMBL | A0A2H5N1P0 | 1e-102 | A0A2H5N1P0_CITUN; Uncharacterized protein | ||||
STRING | Lus10018360 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21159 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 4e-96 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018360 |
Publications ? help Back to Top | |||
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