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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 18666.2 Da PI: 8.6168 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.1 | 2e-45 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv++pyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++ Lus10018275 16 PCAACKLLRRRCAQDCVFSPYFPADQPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 113 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Lus10018275 114 AE 115 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.266 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-45 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MKENNGRKQG GAAASPCAAC KLLRRRCAQD CVFSPYFPAD QPHKFANVHK VFGASNVNKM 60 LQELPVHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQTQLA LAQAEVVHLR 120 VRQTAGLSGH GLSSGSPSHS GSPSSRLMGI SQGKPIFDMD MVDHASLGES MWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-49 | 13 | 127 | 8 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-49 | 13 | 127 | 8 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018275 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353911.1 | 1e-102 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 2e-82 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A314YWZ3 | 1e-103 | A0A314YWZ3_PRUYE; LOB domain-containing protein 4 | ||||
STRING | Lus10018275 | 1e-127 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-79 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018275 |