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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lus10018220 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family |
MYB |
Protein Properties |
Length: 389aa MW: 42441.4 Da PI: 9.9969 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lus10018220 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT++Ed +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l
Lus10018220 107 KGQWTEDEDRKLIRLVKQFGIRKWAEIAQRLS-GRAGKQCRERWHNHL 153
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 161 | 201 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W++eE+ +lvda+++ G++ W+ Ia+ ++ gRt++ +k++w+
Lus10018220 161 GWSEEEERILVDAHAKIGNR-WAEIAKLIP-GRTENAIKNHWN 201
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MTNWNSSAAV PISKQPAIVA AANELLYGGG GGGVNNYNLT AAGWSAAAAP VADFDWTWER 60 LMMNMRNSNP NDVAAAGEGT NKKKKKNNKG SVVVKKRQSS CSAALIKGQW TEDEDRKLIR 120 LVKQFGIRKW AEIAQRLSGR AGKQCRERWH NHLRPDIKKE GWSEEEERIL VDAHAKIGNR 180 WAEIAKLIPG RTENAIKNHW NATKRRQNSR RKHPKSKSTA ETNATNAVKS HSSSSSILQD 240 YIRSKTLQLN QPTTTTSTTP SSASSGVDGD GDGGSLVPSL SESDEELLFM QNLFASKPLD 300 AGHVDDINGR DRPGFHHAAP SSRHGHHHLY SDLYVSYLLN GGASYASSSG LRDADKAAEG 360 GMLSLEMMDH RGNKKEMDLI EMLSSTAS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 1e-45 | 105 | 207 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-45 | 88 | 207 | 38 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-45 | 88 | 207 | 38 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-46 | 105 | 207 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-46 | 105 | 207 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX174446 | 1e-165 | JX174446.1 Linum usitatissimum clone LuBAC375M9, complete sequence. |