PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10018098

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 468aa MW: 52960.4 Da PI: 6.5236

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10018098	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	267.6	4.1e-82	72	442	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 + Ll++Ae ++ +d e+a +lL l+s +g+ ++R+++y+t AL++r+++ s+ ++++ + e+ + + ++ ++ + P++++++l Lus10018098 72 LHHLLSAAEEMDRQDYEQAISLLDVCDSLSSRTGNLTERVVHYITHALRERVYNeSGVKISSLGEEIEKLNVEeaMTAPSPIVASIYAKIPFYQIGQL 169 689************************************************966666666554333332221333334444559999***** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 + qaI+e+ve+++rvHiiD+ i +G+QW aL+qaLasR+ ++ l+iT+++s gs++ ++etgerL kfA+++++p+ f+++v++++ +++ ++ Lus10018098 170 AGVQAIVESVEKSKRVHIIDLKIRNGMQWTALMQALASRRkRDLEILKITALVS--CGSADLIRETGERLVKFAKSINIPLAFRTVVVTNMVQIDKKR 265 *********************************98857788*****..67************************************ PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L+++p++++a+ + ++l++l ++ + d+++ +++ ++P v+vv+e ea+ +s +F +rf+e l +y+a fd++++ + +++ +++ +E ++l+ Lus10018098 266 LDLDPKDVVAIFSEYALQHLIGKPNQ----LDALMTVIRYIRPMVMVVIETEANFSSLDFSHRFVEELFHYAAYFDCVDTCFDNDEANKMILESMFLS 359 ****************955554....566************************************************************* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ ++ +e++e r t Wr+ ++++ + ++ ls +++++++ ll +++ ++ +v+ + sl+lgWk+ p+ s+SaW+ Lus10018098 360 EQLNGILVKEEKE-MTRSVTIDVWRKFFSQFWMLEAGLSPTTMETVNQLLGRFSsGEYCTVNMDGRSLLLGWKGTPMCSLSAWK 442 ********9.99**********************************666678999999***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.763	45	421	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-79	72	442	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MFSPSSVELL RSCVKETMIR KAREPTSQKM SLPDIIRTAS VKFINNPSSP SESDLIPSNQ 60 EEEAITKQIG LLHHLLSAAE EMDRQDYEQA ISLLDVCDSL SSRTGNLTER VVHYITHALR 120 ERVYNESGVK ISSLGEEIEK LNVEEAMTAP SPIVASIYAK IPFYQIGQLA GVQAIVESVE 180 KSKRVHIIDL KIRNGMQWTA LMQALASRRK RDLEILKITA LVSCGSADLI RETGERLVKF 240 AKSINIPLAF RTVVVTNMVQ IDKKRLDLDP KDVVAIFSEY ALQHLIGKPN QLDALMTVIR 300 YIRPMVMVVI ETEANFSSLD FSHRFVEELF HYAAYFDCVD TCFDNDEANK MILESMFLSE 360 QLNGILVKEE KEMTRSVTID VWRKFFSQFW MLEAGLSPTT METVNQLLGR FSSGEYCTVN 420 MDGRSLLLGW KGTPMCSLSA WKFLLAKPLK QTYKKKRIMD ILDFSIG*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MFSPSSVELL RSCVKETMIR KAREPTSQKM SLPDIIRTAS VKFINNPSSP SESDLIPSNQ  60
EEEAITKQIG LLHHLLSAAE EMDRQDYEQA ISLLDVCDSL SSRTGNLTER VVHYITHALR  120
ERVYNESGVK ISSLGEEIEK LNVEEAMTAP SPIVASIYAK IPFYQIGQLA GVQAIVESVE  180
KSKRVHIIDL KIRNGMQWTA LMQALASRRK RDLEILKITA LVSCGSADLI RETGERLVKF  240
AKSINIPLAF RTVVVTNMVQ IDKKRLDLDP KDVVAIFSEY ALQHLIGKPN QLDALMTVIR  300
YIRPMVMVVI ETEANFSSLD FSHRFVEELF HYAAYFDCVD TCFDNDEANK MILESMFLSE  360
QLNGILVKEE KEMTRSVTID VWRKFFSQFW MLEAGLSPTT METVNQLLGR FSSGEYCTVN  420
MDGRSLLLGW KGTPMCSLSA WKFLLAKPLK QTYKKKRIMD ILDFSIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-32	79	441	27	378	Protein SCARECROW
5b3h_A	1e-32	79	441	26	377	Protein SCARECROW
5b3h_D	1e-32	79	441	26	377	Protein SCARECROW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10018098

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10018098	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	3e-46	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10018098