PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018060
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BBR-BPC
Protein Properties Length: 296aa    MW: 33291.9 Da    PI: 9.8411
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018060genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind57.94.7e-1811241103
    GAGA_bind   1 mdddgsre..rnkgyye.................pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                  md+  +++  r+k yy+                 ++ ++l   ++++++s++ae+da+i+ern+a++ek++a+a+rd+a lqr++alaer+kal erd
  Lus10018060   1 MDEGEQHQngRFKDYYKaahnpwnmmpqhqakeqQQpNALV--MNKKILSILAEKDAAIQERNIAVAEKREALAARDEAILQREQALAERDKALRERD 96 
                  6665544448999***9*********999988753346666..99***************************************************** PP

    GAGA_bind  79 nkllalllvensla...salpvgvqvls 103
                  ++++a++++e++++   +  p+ v   s
  Lus10018060  97 SAFAAMQYRETAMNfssKRIPHPVYRFS 124
                  ************9965444454444444 PP
2GAGA_bind248.73.7e-76147295153301
    GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                  ++++k +k++++ ++k  +e+ ++ v + ++ ++ k+e++++d++ln +s+D+st+P+PvCsCtG+ +qCYkWG GGWqS+CCttt+S +PLP+ +++
  Lus10018060 147 KRSKKANKSPRKGNNKCLGEDLNRVVVHVTEGRKFKTEWDTLDVGLNLISYDKSTMPAPVCSCTGTAHQCYKWGDGGWQSSCCTTTMSCHPLPQLPNK 244
                  4556677777777778778888777777777799**************************************************************** PP

    GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  r+aR++grKmS+++f+klL++La+eG+dl  pvDLkd+WA+HGtn+++ti+
  Lus10018060 245 RHARVGGRKMSGSVFTKLLSRLAGEGHDLTVPVDLKDYWARHGTNRYITIK 295
                  **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1341295IPR010409GAGA-binding transcriptional activator
PfamPF062175.7E-901295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDEGEQHQNG RFKDYYKAAH NPWNMMPQHQ AKEQQQPNAL VMNKKILSIL AEKDAAIQER  60
NIAVAEKREA LAARDEAILQ REQALAERDK ALRERDSAFA AMQYRETAMN FSSKRIPHPV  120
YRFSNDSEVT NMDALPITTI PAGKPPKRSK KANKSPRKGN NKCLGEDLNR VVVHVTEGRK  180
FKTEWDTLDV GLNLISYDKS TMPAPVCSCT GTAHQCYKWG DGGWQSSCCT TTMSCHPLPQ  240
LPNKRHARVG GRKMSGSVFT KLLSRLAGEG HDLTVPVDLK DYWARHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018060
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659561.11e-144protein BASIC PENTACYSTEINE4-like
RefseqXP_021659562.11e-144protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-122BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2P2KLL21e-145A0A2P2KLL2_RHIMU; Uncharacterized protein MANES_11G081400
STRINGLus100180600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-125basic pentacysteine 4