PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017908
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 497aa    MW: 55250.9 Da    PI: 7.5506
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017908genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.17.1e-901074941374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl  A+a+++g+   a + La+l   +s  gd++qR++a f+ +L+arl+   s  y+ +  ++t+    +eel a++ ++ vsP+++f+h+ta
  Lus10017908 107 LIHLLLITATAIDEGNSDSALENLAELYRSVSLVGDSVQRVVAQFADGLSARLLTWKSPFYEMIMNRPTA----EEELLAFTDLYRVSPCYQFAHFTA 200
                  689****************************************************888899988888886....799999999*************** PP

         GRAS  99 NqaIleavegeerv.....HiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  Nq I+ea+e+ee+v     H++Dfd+s GlQWp+L+q++++R+  ++  slR+Tg+g+    s e+l++t++rL +fA+ + ++ fef+ l    l  
  Lus10017908 201 NQSIVEAFEREETVngralHVVDFDVSSGLQWPSLIQSISDRAtaSNRISLRVTGFGR----SLEMLRQTESRLVSFAKGFrNLVFEFQGL----LRG 290
                  ***********66666666************************656666*********....9****************9758*******8....666 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr +++E++a+n+v++l +l  +s ++++    +Lk v+ l+P vvv+ve+e  +ns+ Fl rf+e+l+y++a+fdsl+  lp es er  +E
  Lus10017908 291 SKLVNLRKRKNETVAINMVFHLNTLT-DSSAVSN----TLKSVNALNPSVVVLVEHEGCRNSKMFLPRFMESLHYFAAMFDSLDDCLPLESPERLRIE 383
                  67789*******************98.4444444....8*********************************************************** PP

         GRAS 287 rellgreivnvvacegaerre.........rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.............eesgslv.lg 361
                  + llg+ei+ ++ c ++ r           r e++++W+ r+e  GF+ ++ls+++  qa+lll+  +  g +v              +++g ++ lg
  Lus10017908 384 KNLLGKEIKTILNCDKEYRCYlnsknhgplRYEKVQSWKGRMEGHGFGGLKLSSSTLIQANLLLKIRAHYGPTVGgaddvgggfrvfqKDDGKAIsLG 481
                  ***************99885322333444489********************************98777776665444444444444566888888** PP

         GRAS 362 WkdrpLvsvSaWr 374
                  W+dr L+++SaW+
  Lus10017908 482 WQDRCLLTASAWT 494
                  ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.87281460IPR005202Transcription factor GRAS
PfamPF035142.4E-87107494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEDLLQGDAL DLSLSIINTN PTYPGDRQST GPAKRKRSAP LSTSSSSIDV FPIGSPNRDG  60
LLEAKIFRLL QMRDSIMNRA DLNRKLAPLP KTDDDDYGDS GDKGLHLIHL LLITATAIDE  120
GNSDSALENL AELYRSVSLV GDSVQRVVAQ FADGLSARLL TWKSPFYEMI MNRPTAEEEL  180
LAFTDLYRVS PCYQFAHFTA NQSIVEAFER EETVNGRALH VVDFDVSSGL QWPSLIQSIS  240
DRATASNRIS LRVTGFGRSL EMLRQTESRL VSFAKGFRNL VFEFQGLLRG SKLVNLRKRK  300
NETVAINMVF HLNTLTDSSA VSNTLKSVNA LNPSVVVLVE HEGCRNSKMF LPRFMESLHY  360
FAAMFDSLDD CLPLESPERL RIEKNLLGKE IKTILNCDKE YRCYLNSKNH GPLRYEKVQS  420
WKGRMEGHGF GGLKLSSSTL IQANLLLKIR AHYGPTVGGA DDVGGGFRVF QKDDGKAISL  480
GWQDRCLLTA SAWTCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5611549427379Protein SCARECROW
5b3h_A4e-5611549426378Protein SCARECROW
5b3h_D4e-5611549426378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017908
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199010.20.0scarecrow-like protein 21
TrEMBLM5VGL50.0M5VGL5_PRUPE; Uncharacterized protein
STRINGLus100179080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-55GRAS family protein