PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10017819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 160aa MW: 17869.2 Da PI: 8.7531 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 117.7 | 1.7e-36 | 71 | 149 | 3 | 81 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaea 81 ++r ++ +E+E++k+RER+RRai+a+i+aGLR++G+y+l++raD+n+V++AL+reAG vv +DGtt++ s+ l+ ++a Lus10017819 71 GRRCRPVEEKERTKLRERHRRAITARILAGLRRHGDYNLRVRADINDVIAALAREAGRVVLPDGTTFPSKSQVLRFKKA 149 689999**************************************************************88877655444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.7E-32 | 72 | 143 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MATDMQRLIV TSEEEEIDMD VKEEDNRGKH IDAQLMAGID GGMLSDSCDS QFQYHQQLQE 60 QVSTPGGENI GRRCRPVEEK ERTKLRERHR RAITARILAG LRRHGDYNLR VRADINDVIA 120 ALAREAGRVV LPDGTTFPSK SQVLRFKKAL GGRRALGTA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10017819 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511857.1 | 2e-61 | beta-amylase 7 | ||||
Swissprot | O80831 | 2e-47 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | B9RDR8 | 4e-60 | B9RDR8_RICCO; Beta-amylase | ||||
STRING | Lus10017819 | 1e-113 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19853 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45880.1 | 2e-47 | beta-amylase 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10017819 |
Publications ? help Back to Top | |||
---|---|---|---|
|