 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10017680 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
ARF |
| Protein Properties |
Length: 396aa MW: 44515 Da PI: 9.6545 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10017680 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 43 | 7.9e-14 | 69 | 181 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81
f+k+lt sd++++g +++p++ aee ++ ++ t++ +sg s +++ ++++r++lt+GW+ Fv+ ++L +gD+v+
Lus10017680 69 FCKTLTASDTSTHGGFSVPRRAAEEPrkrfshllisqcnhqHRNSLLEIYTTMRGPSGISIANIHKFfvIGQPKRHLLTTGWSVFVSNKRLFAGDSVL 166
99*********************9999999999999997664444578889999****6666666555599*************************** PP
EEE-SSSEE..EEEEE- CS
B3 82 Fkldgrsefelvvkvfr 98
F ++++++l+++++
Lus10017680 167 FI--RDEKQQLLLGIRH 181
**..5578888999886 PP
|
| 2 | Auxin_resp | 124.6 | 6.8e-41 | 207 | 289 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+v+YnPras+seFv++++k++ka++++vs GmRf+m+fete+s rr++Gtv+gv+dldpvrW+ S+Wr+L+
Lus10017680 207 AAHAAANNSPFTVFYNPRASPSEFVIPFSKYNKAMYTQVSSGMRFRMMFETEESGVRRYMGTVTGVTDLDPVRWKSSQWRNLQ 289
79*******************************************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MPPMGSLVVY FPQGHSEQVA ASMQKQTDCI PSYPNLPSKL ICMLHNCDRE ALIASDMGMK 60
QNRQPAEFFC KTLTASDTST HGGFSVPRRA AEEPRKRFSH LLISQCNHQH RNSLLEIYTT 120
MRGPSGISIA NIHKFFVIGQ PKRHLLTTGW SVFVSNKRLF AGDSVLFIRD EKQQLLLGIR 180
HANRQQPALS SSVISSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPFSKYNKA 240
MYTQVSSGMR FRMMFETEES GVRRYMGTVT GVTDLDPVRW KSSQWRNLQV RWDESTAGER 300
PSRVSIWDIE PVVTPFYICP PPFFRPRFPK QPGMPDDESD IENAFKRAMP WLADDFGMKE 360
GGQSSIFPGL SLVQWMIGIN SNRIVPLHAS FKYSA*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Perilli S, et al.
RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling.
Plant Cell, 2013. 25(11): p. 4469-78
[PMID:24285791] - Sun Y, et al.
Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas.
Sci Rep, 2017. 7: p. 40844
[PMID:28102350] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
Plant Cell Rep., 2017. 36(6): p. 843-858
[PMID:28255787] - Olmo R, et al.
Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?
Front Plant Sci, 2017. 8: p. 875
[PMID:28603536] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
Planta, 2017. 246(4): p. 797-802
[PMID:28766014] - Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J
Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana.
Plant Sci., 2017. 264: p. 168-178
[PMID:28969797] - Nakamura M, et al.
Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells.
Plant Physiol., 2018. 176(1): p. 378-391
[PMID:29084900] - Hong L, et al.
Alternative polyadenylation is involved in auxin-based plant growth and development.
Plant J., 2018. 93(2): p. 246-258
[PMID:29155478] - Lee K,Park OS,Seo PJ
Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation.
Sci Signal, 2018.
[PMID:29184030] - Kimura T, et al.
Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis.
Plant Cell Physiol., 2018. 59(4): p. 823-835
[PMID:29401292] - Schoenaers S, et al.
The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.
Curr. Biol., 2018. 28(5): p. 722-732.e6
[PMID:29478854] - Huang KL, et al.
The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots.
Plant Physiol., 2018. 178(1): p. 413-427
[PMID:30026290]
|
