PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017656

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 301aa MW: 33628.7 Da PI: 6.2893

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017656	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.5e-11	172	215	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Lus10017656 172 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 215 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	168	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	170	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-13	172	223	No hit	No description
Pfam	PF00170	2.8E-9	172	216	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-11	172	226	No hit	No description
CDD	cd14703	1.12E-23	173	223	No hit	No description
PROSITE pattern	PS00036	0	175	190	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAQLPPKIPT LPSSWPDFSS DQKPHSAAAQ PPSSAAAANN NHPSWVDEFL DFSSARRGTH 60 RRSASDSIAF LETPLMTLDD DCRGRSNTNG SNNNHIQRHG QHDFDKFDDE QFMSMFSVDD 120 MSSNPGGSNS DDHDSINDDK EAATTTGQSE DNSQQTTPSN GDNNGDRIFD PKRVKRILAN 180 RQSAQRSRVR KLQYISELER SVTSLQAEVS VLSPRVAFLD HQRLLLNVDN SAIKQRIAAL 240 AQDKIFKDAH QEALKREIER LRQVYQHQNN KKADHATAQN NEPTPMTSTV DQKEQQLLQV 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017656

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021661228.1	1e-119	basic leucine zipper 61-like
Swissprot	F4IN23	1e-102	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A067K9X8	1e-118	A0A067K9X8_JATCU; Uncharacterized protein
STRING	Lus10017656	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	4e-66	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10017656

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]