PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017634
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 280aa    MW: 30319.4 Da    PI: 10.2062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017634genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10187230755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++ +L+el+P+       K++ +++LekA+ Y+k Lq
  Lus10017634 187 IAAKNRRERISERLKTLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 230
                  5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.69E-12180234No hitNo description
Gene3DG3DSA:4.10.280.101.1E-12181238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-14183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7188230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNSVQNSGHR RGSLATMKNN HSRNNSAKMS NNSSSSSLGS PNSTTTTTTS NNIVDQQQFI  60
FHAPDPHRVS LDPHHHHHSL IDFRGGSGSL LTFDHPSTAW EDFNGGWDGP VGNTKGANPP  120
DPSTQEFDAV YHPTAKDTPK RPNLGESPQQ PQKKQCNSSG SAATNSKPTT NKTAAKSVLE  180
SKDPQSIAAK NRRERISERL KTLQELVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLATDE  240
FWPAQGARAP DISQVKEAID AILSTQRARK SSSSNSTSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077828.18e-61putative transcription factor bHLH086
TrEMBLA0A067KLM12e-59A0A067KLM1_JATCU; Uncharacterized protein
STRINGLus100176340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-51ROOT HAIR DEFECTIVE6