PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10017602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 26114.6 Da PI: 8.6132 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 5.9e-09 | 94 | 141 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k + a +Le+ ++Y+ sLq Lus10017602 94 SHSVAERVRREKINNKLRCLQELVPGC----HKSMGMAVMLEEIINYVYSLQ 141 8*************************9....7889999*********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.49E-10 | 88 | 145 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-15 | 88 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.805 | 90 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 90 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 94 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-7 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAEFNTQQYW HQRLGTVHHH FPISLDQYSL LPQQQEYHQQ GSASVDADHH IASSSSSPRA 60 NEILGSVRRS RKKKTSGNGE VVHVRARRGQ ATDSHSVAER VRREKINNKL RCLQELVPGC 120 HKSMGMAVML EEIINYVYSL QNQVEVKMLT LAWCGNWKAG QNLEHFLGWM EKLDLDKFLS 180 MELAASAGGA NGYFHNMNLE PQPPIIRSNA QLQVNYCEVT KGSYVQSVGI V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 73 | RRSRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10017602 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10017602 | 1e-174 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 5e-35 | BR enhanced expression 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10017602 |