PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017550
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 293aa    MW: 32559.1 Da    PI: 4.7632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017550genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20126175255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrd +     r +r +lg+++taeeAa+ +++a+++l+g
  Lus10017550 126 KFRGVRQRP-WGKWAAEIRDpF-----RrTRLWLGTYDTAEEAAAVYDNAALQLRG 175
                  89*******.**********66.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-30125183IPR001471AP2/ERF domain
CDDcd000182.02E-31126182No hitNo description
SMARTSM003808.0E-36126189IPR001471AP2/ERF domain
PROSITE profilePS5103223.248126183IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22126183IPR016177DNA-binding domain
PfamPF008472.0E-13126175IPR001471AP2/ERF domain
PRINTSPR003672.0E-10127138IPR001471AP2/ERF domain
PRINTSPR003672.0E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGDFPSVAP VKFSEYQNTT KLLRRTSSSA HDSAQSEFKP PQVVRISVID PNATDSSSDE  60
EEKEFLRPFR QRQRRVKKFV SEITVVEESC SCSGAHQYGA VGGAMRSELK KSKSGDLPTA  120
AAGRRKFRGV RQRPWGKWAA EIRDPFRRTR LWLGTYDTAE EAAAVYDNAA LQLRGPHAVT  180
NFVNPVNSPI STLRFPSPSG ESRSTPVKEE CCYDEFTEFS SLDALLATEA YEFNNSMREI  240
FEETTDMAVD GFLNDDVFSS SVDLGLGLSS WRPDDCFKDI GELFDSDSLL AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18125188468ATERF1
3gcc_A1e-18125188468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668655.11e-79ethylene-responsive transcription factor CRF2-like
TrEMBLA0A067JN861e-75A0A067JN86_JATCU; Uncharacterized protein
STRINGLus100175500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-43cytokinin response factor 2