PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10017442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 330aa MW: 36550.3 Da PI: 10.1533 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.2 | 5.8e-31 | 2 | 55 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++av++LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Lus10017442 2 PRLRWTPDLHLSFLQAVDRLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 55 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 1 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.188 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-14 | 2 | 56 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-23 | 2 | 57 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 3 | 54 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MPRLRWTPDL HLSFLQAVDR LGGQDRATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKFDD 60 PNQGNVQGLL FQGKDNHAYN LSQLPMLQRF NHGPPSPANS RYGDYSSWRR GHNICGTNYM 120 GGGRLGGNNS SSLYGYNNHK PFTTKYSSCD SSPNNNINLP SSLMLKGIQV PISIKSSTST 180 TTTLPNHHST TFENTNTKFL FHRWPPQILT KLASPALEES TSNDIINGGL KRKLMSMRPV 240 RSGDHDLDLE LSLKVSKPAK VDMRGNDYDA VNVVDLDPES TLSLSLSSSS SSKLSEVVRR 300 DNKYNSSIVM NEGVDSKRAR MASTLDLTL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 3 | 58 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 3 | 58 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 3 | 58 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 3 | 58 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10017442 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10017442 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 6e-42 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10017442 |