PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017313

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 314aa MW: 33713.1 Da PI: 8.9335

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017313	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.4e-39	33	92	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ ++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s Lus10017313 33 KEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRPS 92 57799****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	33	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-33	35	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.91	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDTAQWPQGI VVKPSNGTTN PQKSAGGKIN GVKEGVNCPR CNSTNTKFCY YNNYSLTQPR 60 YFCKTCRRYW TEGGTLRNIP VGGGSRKNKR PSSSSASSFS SVSPNTSKKL LPGLVSSSSN 120 YSAAPSLPSS TSSTKIAAPQ NPKMMMMNQE EGHDLNGQMV FPRSFTELMH NHHHQVQPTI 180 AVDDHHDRNN QVSALELLNR SSGGLNSNSG SFMHSHDHGH GQGQDAGFDN YTSGLSFLQH 240 QDFKPSSSSS SLSFSLDGVG LGRPPLLFPF QDLKQVPTIA SNGKANDDHD DHGRAAAADS 300 SGYWTGMLGG GSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017313

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662916	1e-30	KP662916.1 Cajanus cajan Dof24 (Dof24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303678.1	1e-65	dof zinc finger protein DOF4.6 isoform X1
TrEMBL	B9GXU9	2e-64	B9GXU9_POPTR; Uncharacterized protein
STRING	Lus10017313	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Lus10017313