PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 319aa MW: 34165.9 Da PI: 7.088 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.6 | 3.3e-34 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Lus10016676 45 KPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.849 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-33 | 42 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 44 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.0E-27 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MPLDGSNLGG GGGGGAAAGH LDYQRSLDGT NLPGDACLVL TTDPKPRLRW TTELHDRFVD 60 AVTQLGGPDK ATPKTIMRTM GVKGLTLYHL KSHLQKYRLG RQSCKETTES SKDVGIAASI 120 AESQDTGSST STSSRMAAQD LNDGYQVTEA LRVQMEVQRR LHEQLEVQRR LQLRIEAQGK 180 YLQSILEKAC KALNDQAAAT VGLEAAREEL SELAIKVSNE CQGMAPMYTI KMPSLPELAA 240 ALESRSALNM PARIGDCSTE SCLTSIGSPA SPMGMSPQAA AAVAAMKKRP RSVFGNGDSL 300 LLDGSMRQEV EWMMHNMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016676 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369801.1 | 0.0 | protein PHR1-LIKE 3 | ||||
Swissprot | Q8LAJ7 | 1e-132 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | U5GS23 | 0.0 | U5GS23_POPTR; Uncharacterized protein | ||||
STRING | Lus10016676 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13367 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-114 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10016676 |
Publications ? help Back to Top | |||
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