PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016566
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 340aa    MW: 35012.6 Da    PI: 9.7622
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016566genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3994154262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e  lkcprC+stntkfCy+nny+l+qPr+fCk+CrryWtkGGalrnvPvGgg+r+nkkss
  Lus10016566  94 PEPGLKCPRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNKKSS 154
                  56789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3578150IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.61898152IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3298152IPR003851Zinc finger, Dof-type
PROSITE patternPS013610100136IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWHHHHH QSVNQLVQHD QGGGGASASY EAPPPRPPHQ QHQLSPLPAQ  60
QMVPHRGGGG GVGAASIRPG SMADQARQAK IPQPEPGLKC PRCESTNTKF CYFNNYNLTQ  120
PRHFCKTCRR YWTKGGALRN VPVGGGCRRN KKSSAAKGNK NSGGGGGGGS SGSGTSTSSA  180
AAGMILPSEI MGHLPHHHQL PPFLAHQFGA GGNNLGLNYG GGGGGSGGGA EMGLFQMGGS  240
SSNSGMVQQF PFFETAAGNL YGSFQNEGMM SGGGGGGTSN SSSRVNAQLA QVKPELQGVN  300
LVTRQPFADS DSGNQYWGGR GAGNAGASWT DLTGLNSHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016566
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719936.11e-82PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBLA0A1U8LZE52e-81A0A1U8LZE5_GOSHI; dof zinc finger protein DOF2.2-like isoform X2
STRINGLus100165660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.19e-45DNA binding with one finger 2.4