PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016413
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 281aa    MW: 30962.6 Da    PI: 7.1929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016413genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-121464148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++ Ede+l+++     g+   +W  Iar  g+ R++k+c++rw +yl
      Lus10016413 14 RGLWSAAEDEKLKKYMSSNTGRrlgCWGEIARNAGLQRCGKSCRLRWINYL 64
                     788**********************************************97 PP
2Myb_DNA-binding46.21.1e-1470114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ E+ l+++++ +lG++ W+ Ia++++ gRt++++k++w++ 
      Lus10016413  70 RGPFSPYEQHLILHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNTT 114
                      89********************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.341964IPR017930Myb domain
SuperFamilySSF466891.95E-2412111IPR009057Homeodomain-like
SMARTSM007171.9E-81366IPR001005SANT/Myb domain
PfamPF002491.4E-101464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-191571IPR009057Homeodomain-like
CDDcd001679.73E-71764No hitNo description
PROSITE profilePS5129423.78465119IPR017930Myb domain
SMARTSM007175.6E-1369117IPR001005SANT/Myb domain
PfamPF002499.4E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2572118IPR009057Homeodomain-like
CDDcd001674.99E-790115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNDSNTISS KLRRGLWSAA EDEKLKKYMS SNTGRRLGCW GEIARNAGLQ RCGKSCRLRW  60
INYLRPDLKR GPFSPYEQHL ILHLHSLLGN RWSQIAARLP GRTDNEIKNF WNTTLKKRTK  120
MTTMLTSSTT TNYNEGSTST ATGGSSMSTS LEHHHPRDTM LIEGQGINND VKIPLFSDHH  180
HGVMMMSSNH HTMSSGVGCT GFESAAASTI TATTASSSGF HPLNGCINHH DGDPLMAASV  240
LDGCDDGDQI ILSSGGEDSN YNIVNYDNYC NWDIMEDLFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-21511918128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016413
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592969.12e-61transcription factor MYB83
RefseqXP_028193865.12e-61transcription factor MYB83-like
SwissprotQ9C6U15e-56MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A0B2QHP36e-60A0A0B2QHP3_GLYSO; Transcription factor MYB46
TrEMBLI1LVD96e-60I1LVD9_SOYBN; Uncharacterized protein
STRINGLus100164130.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-51myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]