PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016225
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 210aa    MW: 23108.8 Da    PI: 8.4067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016225genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1973123356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ykGVr+++ +g+++AeIrdp+ ng   r++lg++ ++e+Aa a+++a+ +++g+
  Lus10016225  73 YKGVRRRP-WGKYAAEIRDPKRNG--VRIWLGTYESPEDAALAYDRAAFQMRGA 123
                  9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-3072132No hitNo description
SuperFamilySSF541714.9E-2372131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-3172131IPR001471AP2/ERF domain
SMARTSM003804.2E-3772136IPR001471AP2/ERF domain
PROSITE profilePS5103223.30172130IPR001471AP2/ERF domain
PfamPF008472.4E-1372122IPR001471AP2/ERF domain
PRINTSPR003677.0E-137384IPR001471AP2/ERF domain
PRINTSPR003677.0E-13112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSTQIQALES IRNHLFNDDS ESAPITSNTA SFYSAGCQSF TTLLDADNWS DILSQLTVEL  60
PAVALPKKKA NNYKGVRRRP WGKYAAEIRD PKRNGVRIWL GTYESPEDAA LAYDRAAFQM  120
RGAKAKLNFP HLVGSTDYEP IRVTNKKRGS SEPSSSSGDS LSGSESDLSP KAKRRTNVLE  180
SSSYVVVEWD NQTNLVSQMP FGIELLANQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-3069137270ATERF1
3gcc_A9e-3069137270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016225
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.11e-55ethylene-responsive transcription factor 13
SwissprotQ8L9K15e-46ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLU5FRU23e-54U5FRU2_POPTR; Uncharacterized protein
STRINGLus100162251e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-45ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]