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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25130.3 Da PI: 4.5203 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 133 | 183 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+++AeIrdp+ ng +r++lg+++t+e+Aa a+++a+ +++g+ Lus10016212 133 FKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYDTPEDAALAYDRAAFEMRGA 183 8*******.**********98776..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-14 | 132 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-37 | 132 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.525 | 132 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.06E-31 | 132 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 133 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 133 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-23 | 133 | 191 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-9 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MWGYSDETDI IDSLFMDDYS SDPSFLDSIH HFLISGDFEN DVVPSSTTTT SCGDDFSNPA 60 FLDSIHHFLI SENFDQNDVD VPTADPSTTT SSSSSGSQQS SSPAVTSDPT EEDPCPAVPV 120 ETKRSSETST WRFKGVRRRP WGKYAAEIRD PKRNGARIWL GTYDTPEDAA LAYDRAAFEM 180 RGAKAKLNFP HLAGSTEYEP VRVTNGNKKR TAGQTDDPVN QKRIKASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 133 | 190 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-28 | 133 | 197 | 6 | 70 | ATERF1 |
3gcc_A | 2e-28 | 133 | 197 | 6 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016212 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611585.1 | 1e-49 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A2C9VTM3 | 3e-48 | A0A2C9VTM3_MANES; Uncharacterized protein | ||||
STRING | Lus10016212 | 1e-168 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-43 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016212 |