PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016210
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 204aa    MW: 22858.3 Da    PI: 5.1435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016210genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-2082132356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ykGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Lus10016210  82 YKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDRAAFQMRGA 132
                  9*******.**********98776..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-3681145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3181140IPR001471AP2/ERF domain
PROSITE profilePS5103223.48581139IPR001471AP2/ERF domain
CDDcd000187.11E-3081141No hitNo description
PfamPF008472.7E-1481131IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2381140IPR016177DNA-binding domain
PRINTSPR003678.5E-108293IPR001471AP2/ERF domain
PRINTSPR003678.5E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSTQIQALES IRNYLFNEDS ESAALTSDTA SLHSGCLQSF SSLLGADYNW CDIFSELTDS  60
TVESKDELLP TVVMPKKKAN NYKGVRRRPW GKYAAEIRDP KRNGARIWLG TYETPEDAAL  120
AYDRAAFQMR GAKSKLNFPH LVGSTDYEPV RVTNKKRGSP EQSSSSSAVS GSENESPEPK  180
RRMSLLEWSY VEDEWDQSNA IWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3078146270ATERF1
3gcc_A2e-3078146270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611585.14e-51ethylene-responsive transcription factor 13-like
SwissprotQ8L9K18e-46ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2C9VTM39e-50A0A2C9VTM3_MANES; Uncharacterized protein
STRINGLus100162101e-150(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-46ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]