PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016209
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 207aa    MW: 22635.1 Da    PI: 5.3931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016209genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-1977128256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  gykGVr+++ +g+++AeIrdp+ ng  +r +lg++ t+e+Aa a+++ + +++g+
  Lus10016209  77 GYKGVRRRP-WGKYAAEIRDPKRNG--ARLWLGTYETPEDAALAYDRVAFQMRGA 128
                  8********.**********98776..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-2976137No hitNo description
SMARTSM003806.7E-3477141IPR001471AP2/ERF domain
PfamPF008472.1E-1377127IPR001471AP2/ERF domain
PROSITE profilePS5103223.14377135IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2277136IPR016177DNA-binding domain
PRINTSPR003671.5E-97889IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3078136IPR001471AP2/ERF domain
PRINTSPR003671.5E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MMSTQIEALQ SIRNHLFDDD SESGLITSNA TSFCAEFRSF STLLEADNWS DILSQLADDA  60
STVQVVDNDV ALPKKAGYKG VRRRPWGKYA AEIRDPKRNG ARLWLGTYET PEDAALAYDR  120
VAFQMRGARA KLNFPHLVGS NDYEPVRVTN KKRNSPEPSS AGASSSGSGA ESPKAKRRMS  180
LLLESYVEEE CGTSQMPFGS ELSASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2978142670ATERF1
3gcc_A1e-2978142670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016209
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727349.19e-55PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_017640228.18e-55PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ8L9K11e-43ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A1U8MP192e-53A0A1U8MP19_GOSHI; ethylene-responsive transcription factor 2-like
STRINGLus100162091e-152(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-44ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]