PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016151
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 337aa    MW: 36673.8 Da    PI: 4.3437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016151genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10160203755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ErrRR  +++++  Lr+l+P+      +K++Ka+i   Av Y+++Lq
  Lus10016151 160 VSERRRRGSMKEKLYALRSLVPNI-----TKMDKASIIGDAVSYVQDLQ 203
                  57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-16150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-12151203No hitNo description
PROSITE profilePS5088815.535153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8161203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MESFNGNQSF NHSNLELLDF IDDLNFDQFI DLIRGGNEDD HAGAGTGGGF DAGYDLINDF  60
GGGVMQPVAG DYFAAGVVHE GLVVSFENFA PPPEDLTAAY FGPAVGGGGG GGDEADDYYD  120
DYWNVDGGEV SSGTTTTTGM TEVPVGEPKR RKADRSKTLV SERRRRGSMK EKLYALRSLV  180
PNITKMDKAS IIGDAVSYVQ DLQLRSKKLQ SEIAGLEASL LANDAQQNSQ FGGPNEYFYT  240
HKQIDVYQVE ESGYFVRLVC NKGGNAAVSL YKALESLANF TVQSMNLNSS PPDKFIFTFN  300
LLVVREIQQQ QHINLPNLKL WVTSALLNQG FELLTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149165RRKADRSKTLVSERRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372500.11e-82PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A1Y0DD993e-81A0A1Y0DD99_PYRCA; FER-like iron deficiency-induced transcription factor
STRINGLus100161510.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-69FER-like regulator of iron uptake