PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016091
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 299aa    MW: 31592.5 Da    PI: 8.1312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016091genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23108209199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+s +++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   +++ +e
  Lus10016091 108 FAKTLTQSGANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNRKKLVAGDSIVFL--RSEFGE 201
                  89****************************996555555..8************************************************..45999* PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10016091 202 LCVGIRRA 209
                  *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-36102211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-28104210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-22107208No hitNo description
PROSITE profilePS5086312.703108210IPR003340B3 DNA binding domain
SMARTSM010191.5E-20108210IPR003340B3 DNA binding domain
PfamPF023621.8E-21108209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKEKSFVDPQ LWQACAGSLV QIPPLNSHVF YFPQGHAEHS QSPVSFPPDC SKLPAAVLCR  60
IAAVDFLADQ ESDEVFSKLT FVPISSESEE KVFDGGSLME KNNKPASFAK TLTQSGANNG  120
GGFSVPRYCA ETIFPRLDYS ADPPVQTVVA KDVHGEVWKF RHIYRGTPRR HLLTTGWSSF  180
VNRKKLVAGD SIVFLRSEFG ELCVGIRRAK RGVAGGVGAE KLCQSGWGIN ANSWSAGGIF  240
SPYGGVSIKR NGSGDSGAGG RREGPAAPVK VTAEEVLEAA TSAAEGRPGG SGGSDIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-62421148261Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384909.11e-117auxin response factor 10
RefseqXP_024455732.11e-117auxin response factor 10
SwissprotQ653H71e-103ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9MZ571e-116B9MZ57_POPTR; Auxin response factor
TrEMBLU7DU591e-118U7DU59_POPTR; Auxin response factor (Fragment)
STRINGLus100160910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15884610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.13e-94auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]