PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015913

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 427aa MW: 45747.9 Da PI: 8.283

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015913	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	6.9e-16	230	287	3	60
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L N++L k+l+ ++ ++ + Lus10015913 230 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRDDNSSLLKRLSDISHKYNQSS 287 689********************************************99998887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-19	228	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	230	285	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.6E-14	231	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-11	231	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-13	232	285	No hit	No description
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.3E-31	299	420	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDRVFSVDGM SDQFWSPPSP PPPNHQRHRH LPAPSPPPTV DGSSKMNRSA SEWAFQRFLQ 60 EASSAAPSDS ERSDVVHVNK DHRGNSSSSS SINAANGAAS ASTAPPEIPV DSEEYHAFLK 120 SKLNLACAAV ALSRGSYLKA QDSSGRADSG SQASNNSQVG SNTPSKGGND LSGSISKDSD 180 DPVEIPSLPT TLKRSAVLMK STTSGSSRDQ SEDDENEEEF ATADNTNPAD VKRVRRMLSN 240 RESARRSRRR KQAHLTELET QVSQLRDDNS SLLKRLSDIS HKYNQSSVDN RVLKADVETL 300 RTKVKMAEET VKRITGVTTI FQVRKEMSTA SIPSSSDTSA DASVPASKHH TNHSPTKPSS 360 NTESRGNNCM SDVSTVENGQ SDDGAGGGPA VTIGNKIGQK ASLRRIASLE HLQKRIRGEA 420 SSNGEQ*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDRVFSVDGM SDQFWSPPSP PPPNHQRHRH LPAPSPPPTV DGSSKMNRSA SEWAFQRFLQ  60
EASSAAPSDS ERSDVVHVNK DHRGNSSSSS SINAANGAAS ASTAPPEIPV DSEEYHAFLK  120
SKLNLACAAV ALSRGSYLKA QDSSGRADSG SQASNNSQVG SNTPSKGGND LSGSISKDSD  180
DPVEIPSLPT TLKRSAVLMK STTSGSSRDQ SEDDENEEEF ATADNTNPAD VKRVRRMLSN  240
RESARRSRRR KQAHLTELET QVSQLRDDNS SLLKRLSDIS HKYNQSSVDN RVLKADVETL  300
RTKVKMAEET VKRITGVTTI FQVRKEMSTA SIPSSSDTSA DASVPASKHH TNHSPTKPSS  360
NTESRGNNCM SDVSTVENGQ SDDGAGGGPA VTIGNKIGQK ASLRRIASLE HLQKRIRGEA  420
SSNGEQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	251	RRSRRRKQ
2	246	251	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015913

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038579.1	1e-141	PREDICTED: light-inducible protein CPRF2-like isoform X2
Swissprot	Q99090	1e-105	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	B9SZ77	1e-134	B9SZ77_RICCO; Light-inducible protein CPRF-2, putative
STRING	Lus10015913	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	5e-75	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10015913

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]