PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015848
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 331aa    MW: 37531 Da    PI: 7.6608
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015848genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.11.3e-20165217255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   r++WtpeL ++F  av++L G+++AtP +il++m+v+gL ++++ SHLQkY++
  Lus10015848 165 SRVVWTPELQAKFKLAVHEL-GIHRATPTKILKHMNVPGLNRKNISSHLQKYKI 217
                  79******************.*******************************86 PP
2Response_reg34.78.9e-1321106186
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                   +l+vdD+ +   ++ ++l+ +g   v++a+ g eal ++k+k    D++l+ + + +md ++++++ire   + p++v+++++  +++
   Lus10015848  21 ILLVDDDSDRVTIVSKMLRASGH-TVTTAKLGNEALCIFKDKGdeLDVVLIEMHLADMDKFKFVESIREMT-TKPVVVFSRESIVDMR 106
                   89*********************.***************988889************************99.9999999987766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-1516101No hitNo description
SuperFamilySSF521728.25E-1519127IPR011006CheY-like superfamily
SMARTSM004480.004419120IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011016.69520139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-821107IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.32E-1022106No hitNo description
PROSITE profilePS5129410.641161220IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22162221IPR009057Homeodomain-like
SuperFamilySSF466892.87E-15162221IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17165216IPR006447Myb domain, plants
PfamPF002491.2E-7166216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSKNVLPNEN DENCSSLDIN ILLVDDDSDR VTIVSKMLRA SGHTVTTAKL GNEALCIFKD  60
KGDELDVVLI EMHLADMDKF KFVESIREMT TKPVVVFSRE SIVDMRNPIT KDDIETLWRL  120
FITKKESLLS NNCHVESVQE SRNNKRKRVE EWSPEGAENG VSKRSRVVWT PELQAKFKLA  180
VHELGIHRAT PTKILKHMNV PGLNRKNISS HLQKYKIYLK EKLEELEKTL LEDDTASPVL  240
KNLLAEIHTT PILRNNNNSQ VGNPSRRNFG IYGGSPGTMM SAGYYWQQPR WSVTVTELVE  300
ILVEGFSRYL VNDTIPWPGA VPVLKAYLSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-14164220157Transcription factor LUX
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100158480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1436288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.25e-26response regulator 1