PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015824
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 395aa    MW: 45324.1 Da    PI: 6.2056
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015824genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.4e-2580159286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W ++e ++Li++rrem+  ++++k++k+lWe++s kmr++gf rsp++C++kw+nl k++kk+k+++k+     s +++y+++++
  Lus10015824  80 WVQDEMRCLIALRREMDGLFNTSKSNKHLWEQISLKMRDKGFDRSPTMCTDKWRNLLKEFKKVKHQDKG-----SAKMSYYKEID 159
                  *******************************************************************98.....56788999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.07272136IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-473138IPR009057Homeodomain-like
SMARTSM007173.5E-576138IPR001005SANT/Myb domain
CDDcd122037.08E-2778143No hitNo description
PfamPF138371.7E-1979161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEMAPN SQDNMIIEVV SPNCDLHPLP LQQHTSNPNP PPPPPPMILG  60
ESSGEDTHEI RAPKKRAETW VQDEMRCLIA LRREMDGLFN TSKSNKHLWE QISLKMRDKG  120
FDRSPTMCTD KWRNLLKEFK KVKHQDKGSA KMSYYKEIDE ILKERGKTTS QQQQQQYKCP  180
TPTSKVDSFM QFAEKGFEDT SITFGPVEAS GRPTLNLERR LDHDGHPLAI TAADAVGASG  240
VPPWNWRETP ASGSESQSYG GRVILVKYGD YLRKIGIDGT ADAIKEAIRS AFRLRTKRAF  300
WLEDEDQVIR SLDRDMPLGN YSLHLDEGLA IKVCLYDETE HIPVHTEEKL FYTEDDYREF  360
LSRRGWTCLR EFDGYRNIDS MDDLRPGAVY RGVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-4574157186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015824
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085610.10.0trihelix transcription factor GT-1 isoform X2
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A067JSB40.0A0A067JSB4_JATCU; Uncharacterized protein
STRINGLus100158240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]