PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015713
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 373aa    MW: 40884.2 Da    PI: 4.4707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015713genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv +++++G g W+t + + g+ R++k+c++rw +yl
      Lus10015713 14 KGAWTSEEDQKLVSYIQEHGEGGWRTLPLKAGLQRCGKSCRLRWANYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129420.753965IPR017930Myb domain
SMARTSM007179.8E-111363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
SuperFamilySSF466899.84E-221589IPR009057Homeodomain-like
CDDcd001673.73E-91661No hitNo description
PROSITE profilePS500904.176292IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-96590IPR009057Homeodomain-like
SMARTSM007171466189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGRTPCCNVD GLKKGAWTSE EDQKLVSYIQ EHGEGGWRTL PLKAGLQRCG KSCRLRWANY  60
LRPDIKRGEF SPEEEERIIE LHASLGNSHS NKNKPLGPAT STTSADVDQQ SHIQVSTSSS  120
SAQLLNKLAA KLAEQEGEEE RENDVVEVEE PLPRPMRRVG SSTSSTRLLN KIASRLAQPM  180
HCLNTLKSIL SSAADGVDSG GYGNMQRCAS TSSLQSDSTA ATSSDMSRSN LSNYNDNSDV  240
NTGDYNDQDM AFLDMLDLDS VLNDDDWPCH QQQQYGSSST LPFGGSQYSL DYDYGHGYSS  300
MDLEQPSTTS SASKSTTTND RVDDSCYDYG FGGEQIRADD YNHGIGGLLD GDDEHGRTFW  360
NDHYDSHTAS FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-141287579B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617198.19e-73transcription factor MYB28-like
TrEMBLA0A2C9VQR32e-71A0A2C9VQR3_MANES; Uncharacterized protein
STRINGLus100157130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.12e-42myb domain protein 34